Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_028978.1
Length=60609
Score E
Sequences producing significant alignments: (Bits) Value
seq5730 122 3e-23
>seq5730
Length=1907
Score = 122 bits (134), Expect = 3e-23
Identities = 144/193 (75%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 54890 GACGACCAGACGCTTGCGCAG--GCGCAGCAGATCGCCGATCTGCCTTTCGTCTATCCGC 54947
|| || ||| ||| ||||||| ||||| | ||||||| | || || ||| |||
Sbjct 1557 GAAGAACAGGCGCATGCGCAGTTGCGCA--ATATCGCCGCCGTCCCGTTTGTCGGGCCGT 1500
Query 54948 ATGTGGCGCTGATGCCCGATGCGCATTTCGGCAAGGGCAGCAGTGTCGGCACGGTGATCC 55007
|||||| |||||||||| | ||| | ||||||||| | || ||| |||||||||
Sbjct 1499 GGGTGGCGGTGATGCCCGACGTGCACCTGGGCAAGGGCGCAACCGTGGGCTCGGTGATCC 1440
Query 55008 CGACCGAGGGCGCCGTCATTCCCGCCGCGGTGGGTGTCGATATTGGCTGCGGCATGATCG 55067
||||| || ||| |||| || |||||||| || || ||||| |||||||||||| ||
Sbjct 1439 CGACCCGCGGTGCCATCATCCCGGCCGCGGTTGGCGTGGATATCGGCTGCGGCATGGCCG 1380
Query 55068 CGGCCCGCACCAC 55080
||| ||||||||
Sbjct 1379 CGGTGCGCACCAC 1367
Score = 86.0 bits (94), Expect = 2e-12
Identities = 86/112 (77%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 55277 CAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGAC 55336
||| |||||||||||||||||||||| ||||||||||| || || || ||| | ||||
Sbjct 1161 CAGATCGGCACGCTGGGCGGCGGCAACCACTTCATCGAACTCTGTCTGGACGAGACCGAC 1102
Query 55337 CGGGTGTGGTTGTTCCTGCACTCAGGTTCTCGTGGCGTCGGTAACAAGATCG 55388
||||||| || | ||||| || || |||||| ||| ||| |||||
Sbjct 1101 GCGGTGTGGGTGATGTTGCACAGCGGCTCGCGTGGCACCGGCAACCTGATCG 1050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 193799381677972
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |