Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028978.1 Length=60609 Score E Sequences producing significant alignments: (Bits) Value seq5730 122 3e-23 >seq5730 Length=1907 Score = 122 bits (134), Expect = 3e-23 Identities = 144/193 (75%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 54890 GACGACCAGACGCTTGCGCAG--GCGCAGCAGATCGCCGATCTGCCTTTCGTCTATCCGC 54947 || || ||| ||| ||||||| ||||| | ||||||| | || || ||| ||| Sbjct 1557 GAAGAACAGGCGCATGCGCAGTTGCGCA--ATATCGCCGCCGTCCCGTTTGTCGGGCCGT 1500 Query 54948 ATGTGGCGCTGATGCCCGATGCGCATTTCGGCAAGGGCAGCAGTGTCGGCACGGTGATCC 55007 |||||| |||||||||| | ||| | ||||||||| | || ||| ||||||||| Sbjct 1499 GGGTGGCGGTGATGCCCGACGTGCACCTGGGCAAGGGCGCAACCGTGGGCTCGGTGATCC 1440 Query 55008 CGACCGAGGGCGCCGTCATTCCCGCCGCGGTGGGTGTCGATATTGGCTGCGGCATGATCG 55067 ||||| || ||| |||| || |||||||| || || ||||| |||||||||||| || Sbjct 1439 CGACCCGCGGTGCCATCATCCCGGCCGCGGTTGGCGTGGATATCGGCTGCGGCATGGCCG 1380 Query 55068 CGGCCCGCACCAC 55080 ||| |||||||| Sbjct 1379 CGGTGCGCACCAC 1367 Score = 86.0 bits (94), Expect = 2e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 55277 CAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGAC 55336 ||| |||||||||||||||||||||| ||||||||||| || || || ||| | |||| Sbjct 1161 CAGATCGGCACGCTGGGCGGCGGCAACCACTTCATCGAACTCTGTCTGGACGAGACCGAC 1102 Query 55337 CGGGTGTGGTTGTTCCTGCACTCAGGTTCTCGTGGCGTCGGTAACAAGATCG 55388 ||||||| || | ||||| || || |||||| ||| ||| ||||| Sbjct 1101 GCGGTGTGGGTGATGTTGCACAGCGGCTCGCGTGGCACCGGCAACCTGATCG 1050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193799381677972