Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_028980.1 Length=62181 Score E Sequences producing significant alignments: (Bits) Value seq4113 116 1e-21 seq3194 86.0 2e-12 >seq4113 Length=2865 Score = 116 bits (128), Expect = 1e-21 Identities = 134/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 33082 CTGTGGGACGCGATCATGCGCGGGACCTGGGACTGGGCGGAGCCTGGGGTGCTGTTCATC 33141 |||||||| | ||||||| |||| |||| || ||||| ||| | | | ||| Sbjct 223 CTGTGGGATGTGATCATGTCTTCCACCTACGACTTTGCCGAGCCAGGGTTTATCCTGATC 164 Query 33142 GAC-GCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGCCACCAACCC 33200 ||| ||| ||||| ||||||||| ||||| |||||| | |||| |||||||||||| Sbjct 163 GACCGCG-TCAACGAAATGAACAACAACTGGTTCTGCGAAAACATCCGCGCCACCAACCC 105 Query 33201 CTGCGGTGAGCAACCGCTCCCGCCCTACGGTGCCTGCTTGTTGGGCTCCTTCAACTTG 33258 || ||||||||||| || || || ||||| |||||| || |||| ||| ||||| || Sbjct 104 GTGTGGTGAGCAACCACTGCCACCTTACGGCGCCTGCCTGCTGGGTTCCGTCAACCTG 47 >seq3194 Length=4057 Score = 86.0 bits (94), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 33157 ATGAACAACCTCTGGTACTGCGAGACCATCGCCGCCACCAACCCCTGCGGTGAGCAACCG 33216 ||||||||| ||||| ||| || | |||| ||| |||||||||||||| |||||||| Sbjct 1 ATGAACAACAACTGGTTCTGTGAAAACATCCGCGCTACCAACCCCTGCGGCGAGCAACCA 60 Query 33217 CTCCCGCCCTACGGTGCCTGCTTGTTGGGCTC 33248 | ||||| ||||| || ||| || ||||||| Sbjct 61 TTGCCGCCATACGGCGCGTGCCTGCTGGGCTC 92 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198825109119732