Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_029003.2
Length=29733
Score E
Sequences producing significant alignments: (Bits) Value
seq6992 158 2e-34
seq6336 80.6 5e-11
>seq6992
Length=1569
Score = 158 bits (174), Expect = 2e-34
Identities = 632/972 (65%), Gaps = 65/972 (7%)
Strand=Plus/Minus
Query 14502 CGGCTTACGCCACTGCGCGTGCACTCGGCCTGCGTGCTTACATCG--ACCAGACTGTCGG 14559
|||| || |||||||||||||| |||||||||||||| | |||| ||| || | ||
Sbjct 1541 CGGCATATGCCACTGCGCGTGCGCTCGGCCTGCGTGCCAAGATCGACACCGAACAG--GG 1484
Query 14560 CTGGCACAAAACCCTGTCTAACGTTGGTGTACAGGGAGTTACCGGCATCAGCGCCTCAGT 14619
||||||||| | |||||| ||||| || || || ||||||||| | ||
Sbjct 1483 CTGGCACAAGAGCCTGTCCAACGTGCCCGTGGCTGGCGTCACCGGCATCTCCAAGGATGT 1424
Query 14620 GTTCTGGGATTTGCAGGCATCCGG-CACCGATGCTGACCTTCTCAACGAGGCCGGGGTTA 14678
| |||||| |||||| |||||| ||||||||| | | | |||||||||| || | |
Sbjct 1423 GCATTGGGATCTGCAGG-ATCCGGCCACCGATGCCGGCATCCTCAACGAGGGCGACATCA 1365
Query 14679 CAACTCTGGT-ACG--CAAGGACGGTTTCCGCTTCTGGGGTAACCGCACCTGCTCAGATG 14735
| || ||||| ||| || |||| ||||||||||| ||||| ||| | || |
Sbjct 1364 CCACGCTGGTGACGTTCA---ACGGCCAGCGCTTCTGGGGATCGCGCACGTGCGCGGAGG 1308
Query 14736 ACCCGCTTTTTCTGTTTGAGAACTACACCCGTACCGCGCAGGTACTGGCCGACACGATGG 14795
|| | || || |||| ||| || ||||||||| | ||||||||||| || |
Sbjct 1307 ACAACATGTTCGCCTTCGAGACGGCCACGCGCACCGCGCAGATCCTGGCCGACACCATCG 1248
Query 14796 CTGAAGCGCACATGTGGGCG------GTCGATAAGCCCATTACCGCCACGCTCATTCGTG 14849
| |||| || || |||| ||||| || || || | || |||| | | |
Sbjct 1247 CCGAAG-GC----GT-GGCGTTCTACGTCGACAAACCGATGCACCCCTCGCTGGTCAGGG 1194
Query 14850 ACATTGTTGACGGCATCAATGCCAAATTCCGCGAGCTGAAAACAAACGGCTACATCGTGG 14909
| | | || ||||| ||||| |||||||| ||||| | |||||| | | |
Sbjct 1193 ATCTGATCGAAACGATCAACGCCAAGTTCCGCGACCTGAAGTCGTCGGGCTACTTGATCG 1134
Query 14910 ACGGTGAATGCTGGTTCGACGAGGAATCGAACGACAAGGAGACCCTGAAAGCC---GGGA 14966
| | | ||||| |||| || || | | ||| | ||| | ||| ||
Sbjct 1133 ATGCCAACGCCTGGTACGAC--GGCAT-GGTCAACAGCGCCACCACGCTCGCCGATGGCG 1077
Query 14967 AACTGTATATCGACTACGACTATACGCCGGTTCCGCCACTGGAGAGCATGACCATGCGCC 15026
||| ||||| |||||||| |||||||| || || ||||||| | || || |
Sbjct 1076 CGCTGCGCATCGATTACGACTACACGCCGGTGCCACCGCTGGAGAACTTGCAGCTGTACA 1017
Query 15027 AGCGTATCACCGATAAATATCTGGTGAATCTGGCCGAATCGGTCAACAGCTAAGG----A 15082
|| |||||| | || |||| | | |||||| |||||| ||| |
Sbjct 1016 AGAAGATCACCACCAGCTACCTGGCCGACTTCGCCGAACGCGTCAACGCGTAACGCACCC 957
Query 15083 GCCTGA-----------AACAACATGGCACTACCCCGTAAACTCAAATACCTGAATATGT 15131
|||| | ||| |||||| | ||| ||||||||| || || |||
Sbjct 956 GCCTCAGATTCCCGGAGAACCCCATGGCTTTGCCCAAGAAACTCAAAGCGCTCAACCTGT 897
Query 15132 TCAACGATGGCCTCAGCTACATGGG---TGTTGTTGAATCCGTAACGTTGCCGAAGCTGA 15188
||||||| || ||||| | || || || ||| || | | |||| | ||||
Sbjct 896 TCAACGACGGTGAGAGCTATCTCGGCCAGGTGGTCGAA---GTGAAGCTGCCCACGCTGT 840
Query 15189 CCCGCAAGCTCGAAAACTATCGCGGCGGCGGTATGAATGGCGCGGCAGCGATTGACCTCG 15248
|||||||| | || | |||||||||||||||||||||||| ||| | || ||| |||
Sbjct 839 CCCGCAAGATGGAGGAGTATCGCGGCGGCGGTATGAATGGCCCGGTCGACATCGACTTCG 780
Query 15249 GCCTCGACGACGATGCATTAACCGTCGAATGGTCTGTCGGCGGCCTGCCTGATGTGGCTC 15308
||| || || ||| | |||||||| || |||| | |||||||| | |
Sbjct 779 GCCAGGA-GAAGATCGA-----GCTCGAATGG-AAGT--GCGG-CGGCCTGATGCGCAGC 730
Query 15309 -TGTGGGCGCAGTACGCCGCC-CCGGGCGCTGATGCTGTGCCGCTGCGTTTTGCTGGTTC 15366
| | ||||||| |||| || || | | || |||| |||||| ||||| || |
Sbjct 729 GTACTGAATCAGTACGGCGCCACCACGCAC-AACGCCGTGCAGCTGCGCTTTGCCGGCGC 671
Query 15367 TTACCAGCGCGACGACACCGGCGAAATCG-TGGCGTCGAGGTGGTCATGCGTGGCCGTCA 15425
|||||||||||||| || ||| | | || || || | || |||| ||||||||
Sbjct 670 CTACCAGCGCGACGATTCCACCGAGGTGGATGCGGTGGAAATTGTTGTGCGCGGCCGTCA 611
Query 15426 TAAAGAAATCGA 15437
|| || || ||
Sbjct 610 CAAGGAGATTGA 599
>seq6336
Length=1727
Score = 80.6 bits (88), Expect = 5e-11
Identities = 235/357 (66%), Gaps = 5/357 (1%)
Strand=Plus/Minus
Query 1952 AGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTCAATAGTGACAATC 2011
|||| ||||| ||||||||| |||||||| | ||||||| || |||| |||
Sbjct 1714 AGCTCGTCGATATCGAACAGGTCGCAGCCACGGCGCTGGGCGTCGAGGATGTTGACGATC 1655
Query 2012 TGCCGCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGCGAGCGCGCTGTGACTGATGTCG 2071
|||||||| | ||| ||| | | || ||||| |||||| ||| || |||
Sbjct 1654 TGCCGCCAGGCGCGGTCCTGGCAGCGGCGACCGCCGGCCAGCGCGTCGTGCGAGACATCG 1595
Query 2072 ATTTCGATGCGGTCAGCGGCACTGGCGCGCCCCTTGTTGAACAGCTCGCCAGACCAGAAG 2131
|| | ||| || | ||| | | ||| | ||||||||| ||||||| | ||| ||
Sbjct 1594 ATCTGGATCCG--CTGCGCCGCCGGCTTG-CCCTTGTTGCGGCGCTCGCCGGTCCAAAAC 1538
Query 2132 GGGTAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAGTTGAGCGCAGATGCTTT 2191
| ||| || |||| |||| | || ||||| ||||| || |||| | |||
Sbjct 1537 GTGTAGGCCTCGTGGGCCATGCTCGATGGTGTGCTGAAGTAGGTCTTGCGCCACTTCTTG 1478
Query 2192 TGCGAGGCCATGCCCGATGCGACTTTGCGCAGCTTCTGAAAATTCG-GGATCCAGAATAT 2250
||| |||||||| ||||| ||| || ||| || || | ||||||| |
Sbjct 1477 TGCATCGCCATGCCGCTGGCGACCTTGTTCA-ATTCGTTGAACCCGTAGGTCCAGAAGAA 1419
Query 2251 TTCATCGACATACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAATTGGTGCCGAG 2307
||| |||| || | | ||||| | || ||| |||||| | |||||| |||||
Sbjct 1418 TTCGTCGAAGTAGAAATTGCCGTGGTAGCCCTGGGCGGTGCGTGCATTGGTCCCGAG 1362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 95010362036740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |