Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq6992 158 2e-34 seq6336 80.6 5e-11 >seq6992 Length=1569 Score = 158 bits (174), Expect = 2e-34 Identities = 632/972 (65%), Gaps = 65/972 (7%) Strand=Plus/Minus Query 14502 CGGCTTACGCCACTGCGCGTGCACTCGGCCTGCGTGCTTACATCG--ACCAGACTGTCGG 14559 |||| || |||||||||||||| |||||||||||||| | |||| ||| || | || Sbjct 1541 CGGCATATGCCACTGCGCGTGCGCTCGGCCTGCGTGCCAAGATCGACACCGAACAG--GG 1484 Query 14560 CTGGCACAAAACCCTGTCTAACGTTGGTGTACAGGGAGTTACCGGCATCAGCGCCTCAGT 14619 ||||||||| | |||||| ||||| || || || ||||||||| | || Sbjct 1483 CTGGCACAAGAGCCTGTCCAACGTGCCCGTGGCTGGCGTCACCGGCATCTCCAAGGATGT 1424 Query 14620 GTTCTGGGATTTGCAGGCATCCGG-CACCGATGCTGACCTTCTCAACGAGGCCGGGGTTA 14678 | |||||| |||||| |||||| ||||||||| | | | |||||||||| || | | Sbjct 1423 GCATTGGGATCTGCAGG-ATCCGGCCACCGATGCCGGCATCCTCAACGAGGGCGACATCA 1365 Query 14679 CAACTCTGGT-ACG--CAAGGACGGTTTCCGCTTCTGGGGTAACCGCACCTGCTCAGATG 14735 | || ||||| ||| || |||| ||||||||||| ||||| ||| | || | Sbjct 1364 CCACGCTGGTGACGTTCA---ACGGCCAGCGCTTCTGGGGATCGCGCACGTGCGCGGAGG 1308 Query 14736 ACCCGCTTTTTCTGTTTGAGAACTACACCCGTACCGCGCAGGTACTGGCCGACACGATGG 14795 || | || || |||| ||| || ||||||||| | ||||||||||| || | Sbjct 1307 ACAACATGTTCGCCTTCGAGACGGCCACGCGCACCGCGCAGATCCTGGCCGACACCATCG 1248 Query 14796 CTGAAGCGCACATGTGGGCG------GTCGATAAGCCCATTACCGCCACGCTCATTCGTG 14849 | |||| || || |||| ||||| || || || | || |||| | | | Sbjct 1247 CCGAAG-GC----GT-GGCGTTCTACGTCGACAAACCGATGCACCCCTCGCTGGTCAGGG 1194 Query 14850 ACATTGTTGACGGCATCAATGCCAAATTCCGCGAGCTGAAAACAAACGGCTACATCGTGG 14909 | | | || ||||| ||||| |||||||| ||||| | |||||| | | | Sbjct 1193 ATCTGATCGAAACGATCAACGCCAAGTTCCGCGACCTGAAGTCGTCGGGCTACTTGATCG 1134 Query 14910 ACGGTGAATGCTGGTTCGACGAGGAATCGAACGACAAGGAGACCCTGAAAGCC---GGGA 14966 | | | ||||| |||| || || | | ||| | ||| | ||| || Sbjct 1133 ATGCCAACGCCTGGTACGAC--GGCAT-GGTCAACAGCGCCACCACGCTCGCCGATGGCG 1077 Query 14967 AACTGTATATCGACTACGACTATACGCCGGTTCCGCCACTGGAGAGCATGACCATGCGCC 15026 ||| ||||| |||||||| |||||||| || || ||||||| | || || | Sbjct 1076 CGCTGCGCATCGATTACGACTACACGCCGGTGCCACCGCTGGAGAACTTGCAGCTGTACA 1017 Query 15027 AGCGTATCACCGATAAATATCTGGTGAATCTGGCCGAATCGGTCAACAGCTAAGG----A 15082 || |||||| | || |||| | | |||||| |||||| ||| | Sbjct 1016 AGAAGATCACCACCAGCTACCTGGCCGACTTCGCCGAACGCGTCAACGCGTAACGCACCC 957 Query 15083 GCCTGA-----------AACAACATGGCACTACCCCGTAAACTCAAATACCTGAATATGT 15131 |||| | ||| |||||| | ||| ||||||||| || || ||| Sbjct 956 GCCTCAGATTCCCGGAGAACCCCATGGCTTTGCCCAAGAAACTCAAAGCGCTCAACCTGT 897 Query 15132 TCAACGATGGCCTCAGCTACATGGG---TGTTGTTGAATCCGTAACGTTGCCGAAGCTGA 15188 ||||||| || ||||| | || || || ||| || | | |||| | |||| Sbjct 896 TCAACGACGGTGAGAGCTATCTCGGCCAGGTGGTCGAA---GTGAAGCTGCCCACGCTGT 840 Query 15189 CCCGCAAGCTCGAAAACTATCGCGGCGGCGGTATGAATGGCGCGGCAGCGATTGACCTCG 15248 |||||||| | || | |||||||||||||||||||||||| ||| | || ||| ||| Sbjct 839 CCCGCAAGATGGAGGAGTATCGCGGCGGCGGTATGAATGGCCCGGTCGACATCGACTTCG 780 Query 15249 GCCTCGACGACGATGCATTAACCGTCGAATGGTCTGTCGGCGGCCTGCCTGATGTGGCTC 15308 ||| || || ||| | |||||||| || |||| | |||||||| | | Sbjct 779 GCCAGGA-GAAGATCGA-----GCTCGAATGG-AAGT--GCGG-CGGCCTGATGCGCAGC 730 Query 15309 -TGTGGGCGCAGTACGCCGCC-CCGGGCGCTGATGCTGTGCCGCTGCGTTTTGCTGGTTC 15366 | | ||||||| |||| || || | | || |||| |||||| ||||| || | Sbjct 729 GTACTGAATCAGTACGGCGCCACCACGCAC-AACGCCGTGCAGCTGCGCTTTGCCGGCGC 671 Query 15367 TTACCAGCGCGACGACACCGGCGAAATCG-TGGCGTCGAGGTGGTCATGCGTGGCCGTCA 15425 |||||||||||||| || ||| | | || || || | || |||| |||||||| Sbjct 670 CTACCAGCGCGACGATTCCACCGAGGTGGATGCGGTGGAAATTGTTGTGCGCGGCCGTCA 611 Query 15426 TAAAGAAATCGA 15437 || || || || Sbjct 610 CAAGGAGATTGA 599 >seq6336 Length=1727 Score = 80.6 bits (88), Expect = 5e-11 Identities = 235/357 (66%), Gaps = 5/357 (1%) Strand=Plus/Minus Query 1952 AGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTCAATAGTGACAATC 2011 |||| ||||| ||||||||| |||||||| | ||||||| || |||| ||| Sbjct 1714 AGCTCGTCGATATCGAACAGGTCGCAGCCACGGCGCTGGGCGTCGAGGATGTTGACGATC 1655 Query 2012 TGCCGCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGCGAGCGCGCTGTGACTGATGTCG 2071 |||||||| | ||| ||| | | || ||||| |||||| ||| || ||| Sbjct 1654 TGCCGCCAGGCGCGGTCCTGGCAGCGGCGACCGCCGGCCAGCGCGTCGTGCGAGACATCG 1595 Query 2072 ATTTCGATGCGGTCAGCGGCACTGGCGCGCCCCTTGTTGAACAGCTCGCCAGACCAGAAG 2131 || | ||| || | ||| | | ||| | ||||||||| ||||||| | ||| || Sbjct 1594 ATCTGGATCCG--CTGCGCCGCCGGCTTG-CCCTTGTTGCGGCGCTCGCCGGTCCAAAAC 1538 Query 2132 GGGTAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAGTTGAGCGCAGATGCTTT 2191 | ||| || |||| |||| | || ||||| ||||| || |||| | ||| Sbjct 1537 GTGTAGGCCTCGTGGGCCATGCTCGATGGTGTGCTGAAGTAGGTCTTGCGCCACTTCTTG 1478 Query 2192 TGCGAGGCCATGCCCGATGCGACTTTGCGCAGCTTCTGAAAATTCG-GGATCCAGAATAT 2250 ||| |||||||| ||||| ||| || ||| || || | ||||||| | Sbjct 1477 TGCATCGCCATGCCGCTGGCGACCTTGTTCA-ATTCGTTGAACCCGTAGGTCCAGAAGAA 1419 Query 2251 TTCATCGACATACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAATTGGTGCCGAG 2307 ||| |||| || | | ||||| | || ||| |||||| | |||||| ||||| Sbjct 1418 TTCGTCGAAGTAGAAATTGCCGTGGTAGCCCTGGGCGGTGCGTGCATTGGTCCCGAG 1362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95010362036740