Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_029013.1
Length=177688
Score E
Sequences producing significant alignments: (Bits) Value
seq5177 100 3e-16
>seq5177
Length=2144
Score = 100 bits (110), Expect = 3e-16
Identities = 184/267 (69%), Gaps = 2/267 (1%)
Strand=Plus/Minus
Query 75570 AAAGCCCATGTTTCGATCCACGTTTCCAT-TGAAACATCAGAGGCAATCGGGAGAAACGC 75628
|| ||||| ||||| ||||| ||||| || | | || || | | ||| || || ||
Sbjct 302 AACGCCCAGGTTTCTATCCAGGTTTCAATCTCAGGCAAT-GACACCAGCGGTAGCAAAGC 244
Query 75629 CAGGTTAGGGCCGCGTCCCTGAATGGTATCTAACAGGGTTTGATATTGCAGGTTAGAATC 75688
|| |||||||| || ||||| |||| ||| | ||| || || || | |||||
Sbjct 243 CACGTTAGGGCTACGGCCCTGGATGGAATCCAGCAGCGTCTGGTACTTAAGGTTGCTGAT 184
Query 75689 AAAAATGATTTTTTCGTGTTCCGGCATTTTTGCATACTGCATACGGTCTATCGACAGATC 75748
|| ||| ||||| || || |||| ||| | |||||| |||| |||
Sbjct 183 GAAGATGTGCTTTTCATGCTCGGGCAGGCCCTGATAATCAGAACGGTCCTGTGACACATC 124
Query 75749 CACTTCTTCCGGTCGCCAGAAGAATGACAGTTGTTTTTCAGTCAAAGTTTCGAATACGCG 75808
||| |||||||| ||||||||||||||||||||||| || ||| |||||||||| |
Sbjct 123 CACCTCTTCCGGACGCCAGAAGAATGACAGTTGTTTCTCGATCAGTTTTTCGAATACCGG 64
Query 75809 ATGTTTTTGTTCTTCATATCGGGCAAC 75835
| ||| || | ||||| || || ||
Sbjct 63 GTATTTCTGCTGGTCATACCGCGCCAC 37
Score = 89.7 bits (98), Expect = 6e-13
Identities = 92/119 (77%), Gaps = 6/119 (5%)
Strand=Plus/Minus
Query 75150 TGAAGTGCTTCATCACGGGCAATCAGACGCATGATCTTCGCGTTACCTTCCATC---TTG 75206
|| || ||||||||||| |||||||| || |||||||| ||||| ||||||||| |||
Sbjct 686 TGCAGGGCTTCATCACGCGCAATCAGGCGGATGATCTTGGCGTTGCCTTCCATCACCTTG 627
Query 75207 CCCTGTTCGGCAAAGTTGAAAGTAAAGGTAAACGAGACATAGAAACGGATCGCTTCCAG 75265
| || |||||||| ||| | ||| || ||| ||||| ||||||||||||||
Sbjct 626 CGCT---CGGCAAAGGCGAATGAGCAGGCGAAGCTGACGTAGAAGCGGATCGCTTCCAG 571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 568387717850880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |