Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq5177 100 3e-16 >seq5177 Length=2144 Score = 100 bits (110), Expect = 3e-16 Identities = 184/267 (69%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 75570 AAAGCCCATGTTTCGATCCACGTTTCCAT-TGAAACATCAGAGGCAATCGGGAGAAACGC 75628 || ||||| ||||| ||||| ||||| || | | || || | | ||| || || || Sbjct 302 AACGCCCAGGTTTCTATCCAGGTTTCAATCTCAGGCAAT-GACACCAGCGGTAGCAAAGC 244 Query 75629 CAGGTTAGGGCCGCGTCCCTGAATGGTATCTAACAGGGTTTGATATTGCAGGTTAGAATC 75688 || |||||||| || ||||| |||| ||| | ||| || || || | ||||| Sbjct 243 CACGTTAGGGCTACGGCCCTGGATGGAATCCAGCAGCGTCTGGTACTTAAGGTTGCTGAT 184 Query 75689 AAAAATGATTTTTTCGTGTTCCGGCATTTTTGCATACTGCATACGGTCTATCGACAGATC 75748 || ||| ||||| || || |||| ||| | |||||| |||| ||| Sbjct 183 GAAGATGTGCTTTTCATGCTCGGGCAGGCCCTGATAATCAGAACGGTCCTGTGACACATC 124 Query 75749 CACTTCTTCCGGTCGCCAGAAGAATGACAGTTGTTTTTCAGTCAAAGTTTCGAATACGCG 75808 ||| |||||||| ||||||||||||||||||||||| || ||| |||||||||| | Sbjct 123 CACCTCTTCCGGACGCCAGAAGAATGACAGTTGTTTCTCGATCAGTTTTTCGAATACCGG 64 Query 75809 ATGTTTTTGTTCTTCATATCGGGCAAC 75835 | ||| || | ||||| || || || Sbjct 63 GTATTTCTGCTGGTCATACCGCGCCAC 37 Score = 89.7 bits (98), Expect = 6e-13 Identities = 92/119 (77%), Gaps = 6/119 (5%) Strand=Plus/Minus Query 75150 TGAAGTGCTTCATCACGGGCAATCAGACGCATGATCTTCGCGTTACCTTCCATC---TTG 75206 || || ||||||||||| |||||||| || |||||||| ||||| ||||||||| ||| Sbjct 686 TGCAGGGCTTCATCACGCGCAATCAGGCGGATGATCTTGGCGTTGCCTTCCATCACCTTG 627 Query 75207 CCCTGTTCGGCAAAGTTGAAAGTAAAGGTAAACGAGACATAGAAACGGATCGCTTCCAG 75265 | || |||||||| ||| | ||| || ||| ||||| |||||||||||||| Sbjct 626 CGCT---CGGCAAAGGCGAATGAGCAGGCGAAGCTGACGTAGAAGCGGATCGCTTCCAG 571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568387717850880