Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq7712 224 5e-54 seq2623 152 2e-32 seq304 100 1e-16 seq9695 82.4 4e-11 >seq7712 Length=1425 Score = 224 bits (248), Expect = 5e-54 Identities = 452/663 (68%), Gaps = 23/663 (3%) Strand=Plus/Plus Query 66088 TCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGG 66147 ||||||| ||||| || | ||||| ||| ||||| ||||| || |||| || Sbjct 724 TCATTCCGACCGGTTCGCTGATGTTGGACATCGCACTGGGGATCGGCGGCCTGCCGAAGG 783 Query 66148 GCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACG 66207 |||| || |||||||||||||| || ||||| || || ||| | || || || || | Sbjct 784 GCCGCGTCGTGGAAATCTACGGGCCGGAATCCTCGGGCAAGACCACCTTGACCCTGCAGG 843 Query 66208 CGGTGGC-CAATGCCCAGAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAGCACTCC 66266 | | || || || |||||| ||||||| |||||| | ||||||||| ||||| | Sbjct 844 CCATTGCGCAGTG-CCAGAAATTGGGTGGCACCGCTGCGTTCATCGACGCCGAGCATGCG 902 Query 66267 CTGGACCCTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTC 66324 || ||||| ||||| ||| ||| || || | ||||| | || || | | Sbjct 903 CTCGACCCGATCTACGC--GGGCAAGCTGGGCGTCAATGTCGACGATCTGCTGCTATCGC 960 Query 66325 AGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGC 66384 |||||||||| || |||||||| ||||| |||| ||| | || || | ||||| Sbjct 961 AGCCGGACACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGT----GCGCTCGAGC 1016 Query 66385 T--GTC--CATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 66440 | ||| ||||| || | ||||| ||||| || ||| ||| || || ||||| Sbjct 1017 TCGGTCGATATCGTGGTGATCGACTCGGTGGCTGCACTGACGCCAAAGGCGGAAATCGAA 1076 Query 66441 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 66500 ||||| || || ||| | || ||||| || || || ||| || || ||||| Sbjct 1077 GGCGAGATGGGCGACCAGCTGCCAGGTCTGCAGGCACGTCTGATGAGCCAAGCGCTGCGC 1136 Query 66501 AAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGC 66560 ||||| ||||| | |||| | ||||||| || | ||| |||||||||||||| Sbjct 1137 AAGCTGACCGGTAACATCAAGCGTTCCAACACCTTGGTGGTCTTCATCAACCAGTTGCGC 1196 Query 66561 GAGAAGATCGGCAACGT------GGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAG 66614 | ||||||||| | | ||| | ||||| | | ||||||| ||||| || Sbjct 1197 CACAAGATCGGCGTCATGATGCCGGGTCAGAGCCCGGAAGTGACCACC---GGCGGTAAC 1253 Query 66615 GCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAA 66674 || |||| ||||||||||| || || |||| ||||||| |||| | | ||| || Sbjct 1254 GCGTTGAAATTCTACGCCTCGGTGCGTCTGGACATCCGTCGTATCGGCGCGATCAAGAAA 1313 Query 66675 GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCG 66734 || || ||| ||||||||| || | | ||||| |||||||||||| |||| || Sbjct 1314 GGTGACGAGATCATCGGCAACCAGACTAAGATCAAGGTGGTCAAGAACAAGTTGGCGCCT 1373 Query 66735 CCG 66737 ||| Sbjct 1374 CCG 1376 >seq2623 Length=5434 Score = 152 bits (168), Expect = 2e-32 Identities = 236/335 (70%), Gaps = 9/335 (3%) Strand=Plus/Minus Query 66324 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 66383 ||||| ||||||||||| ||||| ||||| |||| ||| | || || || || Sbjct 339 CAGCCAGACACTGGCGAACAGGCGCTGGAAATCGCCGACATGCTGGTGCGTTCAGGTTCT 280 Query 66384 CTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 66443 || || || || ||||||||||| || || ||| ||||| || ||| | |||||| Sbjct 279 GTGGATATTGTGGTGGTTGACTCTGTCGCCGCGCTGACTCCGCGTGCAGAGATTGAAGGC 220 Query 66444 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAG 66503 || || || ||||| || | |||||||| |||||||| |||||||||||| |||| || Sbjct 219 GAAATGGGCGACAGCCATATGGGCCTGCAAGCGCGCCTGATGTCGCAGGCCTTGCGTAAA 160 Query 66504 CTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 66563 || || || | |||| | ||||| || ||| | ||| | |||||| | || | Sbjct 159 CTGACTGGTAACATCAAGCGTACCAATACACTGGTGATCTTCATTAACCAGATCCGTATG 100 Query 66564 AAGATCGGCAACGTGGGCTACGG---CCCGAACGAGACCACCACGGGCGGCAAGGCTTTG 66620 || |||||| | || | ||| |||| || || || || |||||||| || | Sbjct 99 AAAATCGGCGTCATG---TTCGGTAACCCG---GAAACAACGACCGGCGGCAACGCGCTT 46 Query 66621 AGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCG 66655 | ||||||||||| || ||| ||||| |||| || Sbjct 45 AAATTCTACGCCTCTGTGCGCCTGGATATCCGCCG 11 >seq304 Length=36179 Score = 100 bits (110), Expect = 1e-16 Identities = 189/274 (69%), Gaps = 8/274 (3%) Strand=Plus/Plus Query 66242 TGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 66301 ||||| || ||||| |||||| | | ||| | | |||||||||||| | ||||| || Sbjct 15168 TGCCTTTATTGACGCGGAGCACGCGATTGACGCCCACTACGCCAAGGCGTTGGGTGTCGA 15227 Query 66302 CCTCGACAACCTCGTGGTGGTT--CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTT 66359 | | | | ||| | || | ||||| ||| |||| || | || |||||||||| | Sbjct 15228 CATTG--ATGCTCTTTATGTCTCGCAGCCCGACTCTGGAGAAGAAGCGCTGGAGATCGCT 15285 Query 66360 GACCTCCTCGTCAAGTCTGGCGAGCTGTC--CATCGTCGTCGTTGACTCTGTGGCGGCCC 66417 ||| || ||| ||| | |||| ||| | | ||||| | ||| ||| || |||| Sbjct 15286 GACACACTGATCAGGTC--GGGAGCAGTCGACCTTGTCGTGCTAGACAGTGTAGCTGCCC 15343 Query 66418 TGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGC 66477 | ||||| || || ||||| ||||| || || || ||| || | | ||||| || | Sbjct 15344 TCGTGCCCCGAGCAGAGCTGGAAGGGGAAATGGGAGACCAGCAAATTGCTCTGCAGGCAC 15403 Query 66478 GCCTCATGTCGCAGGCCATGCGCAAGCTCACCGG 66511 |||| ||| || || |||||||||| || || Sbjct 15404 GCCTAATGAGTCAAGCTCTGCGCAAGCTGACTGG 15437 >seq9695 Length=1156 Score = 82.4 bits (90), Expect = 4e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 66323 TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTC-TGGCG 66381 |||||||||| |||| |||||||| || ||||| || || || || | || ||| | Sbjct 670 TCAGCCGGACTCTGGAGAGCAGGCACTTGAGATTGTAGAGACGCTGGT-ACGTAGTGGGG 612 Query 66382 AGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAG 66441 || | | || || || ||| ||||||||| || ||||| || |||||||||| Sbjct 611 CAGTGGACTTTGTAGTAGTAGACAGTGTGGCGGCTCTTACTCCGCGAGCAGAGCTCGAAG 552 Query 66442 GCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCA 66501 | || || || ||||||||| | || || || || || || ||| ||||| | || | Sbjct 551 GTGAAATGGGTGACAGTCACATGGGACTTCAGGCTCGACTTATGAGTCAGGCTCTACGAA 492 Query 66502 AGCTCAC 66508 |||| || Sbjct 491 AGCTTAC 485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240924507043800