Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq413 113 4e-20 >seq413 Length=60602 Score = 113 bits (124), Expect = 4e-20 Identities = 211/309 (68%), Gaps = 6/309 (2%) Strand=Plus/Plus Query 118416 GTTTATGGATAGTGTGGGAAACGGGAGAGGCTCCCTTGTGAGTTGGAGTTTC---AGTGG 118472 ||||||| | ||||| || |||||| | ||| | | | || |||| || || Sbjct 13869 GTTTATGTAAAGTGTCGGGAACGGGCGCGGCACACGCAGAATCTG---TTTCTGAAGCGG 13925 Query 118473 CTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGT 118532 || | ||| |||| ||| ||||| || || ||||| ||| || || || || ||| | Sbjct 13926 TTCCACGTGGTTCAGATACACATGCGCGTCACCAATGACATGAATAAACTCGCCGGGTTT 13985 Query 118533 AAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGG 118592 | |||| || || || | | | || | || ||||||||| | ||| || || Sbjct 13986 CAAACCTGCCACCTGTGCCACTAAGCGCGTTAGCAGCGCGTAGCTGGCGATATTGAATGG 14045 Query 118593 AACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGC 118652 || || || |||||||| ||||| | |||||||| ||||| || | ||| |||| || Sbjct 14046 GACGCCGAGCCCCATGTCAGCTGAGCGCTGGTACATCTGGCACGACAACTCACCGTCAGC 14105 Query 118653 AACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGTTGGGCAGG 118712 || |||||||||| | ||||| || || ||||| ||||| | | || | || || Sbjct 14106 TACGTAAAACTGACAGAACATGTGGCACGGCGGCAGCGCCATGTCATTAAGATCAGCCGG 14165 Query 118713 ATTCCAGGC 118721 ||||||||| Sbjct 14166 ATTCCAGGC 14174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414415748344504