Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq151 102 7e-17 seq1324 91.5 1e-13 >seq151 Length=51439 Score = 102 bits (112), Expect = 7e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || ||||| ||| || || || || || ||| || || || | Sbjct 38285 GCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 38344 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| ||||| || || ||||||||||| | || | || ||| || Sbjct 38345 GTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTT 38404 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||||| || | | | | || || || ||||||||||| |||||| Sbjct 38405 GTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGAT 38464 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | || || |||| ||| || || || || |||||||| Sbjct 38465 CGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCATCTT 38503 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || ||||| ||| || || || || || || || || || | Sbjct 38057 GCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAGCGTACGGCC 38116 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| ||||| || || ||||||||||| | || | || ||| || Sbjct 38117 GTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTT 38176 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||||| || | | | | || || || ||||||||||| ||| || Sbjct 38177 GTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTAAT 38236 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| ||| || || || || ||||| Sbjct 38237 CGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38272 >seq1324 Length=13147 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 ||||| || || || || | || || || |||| || || || ||||| ||||| || Sbjct 2106 TTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGATC 2165 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216 |||||||||||||| | || | || || || ||| || ||||| || | | | | | Sbjct 2166 AGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCA-CATTGTC 2224 Query 39217 ACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 | | | ||| || ||||||||||| |||||| | || || |||| ||| || ||||| Sbjct 2225 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACAAA 2284 Query 39276 GATTTGCAT 39284 ||| ||||| Sbjct 2285 GATCTGCAT 2293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429482328738518