Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq2528 168 2e-36
seq151 140 8e-28
seq1324 123 6e-23
seq8419 116 9e-21
seq7321 116 9e-21
seq4289 116 9e-21
seq3915 116 9e-21
seq1800 114 3e-20
seq445 113 1e-19
seq1605 111 4e-19
seq179 105 2e-17
seq3900 104 6e-17
seq3910 100 7e-16
seq11141 95.1 3e-14
seq1837 91.5 4e-13
seq520 89.7 1e-12
seq373 87.8 4e-12
seq9043 84.2 5e-11
seq3534 84.2 5e-11
>seq2528
Length=11590
Score = 168 bits (186), Expect = 2e-36
Identities = 210/288 (73%), Gaps = 0/288 (0%)
Strand=Plus/Plus
Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499
||| ||||||||||| ||| ||| ||| | ||| || ||||||| | || || | |
Sbjct 4662 AACTTTATATTTAATTTTTAGTGCATTTGCGGGTGTTGTAGGTACAACTTTATCACTTTT 4721
Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559
|| || | |||||||| || ||| |||||| || | || ||| || | ||
Sbjct 4722 AATTAGAATTGAATTAGCACAACCTGGTAATCAAATTTTTATGGGAAATCATCATTTATA 4781
Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619
|| ||| || | || || ||||| || || ||| |||| ||||| |||||||| | |
Sbjct 4782 TAATGTTGTTGTAACTGCTCATGCTTTAGTAATGGTTTTTTTTTTAGTTATGCCTGCATT 4841
Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679
|| || ||||| || ||||| || || |||||||||||||| || ||||||||||||||
Sbjct 4842 AATCGGAGGTTTTGGTAATTGGTTTGTACCTTTAATGATTGGCGCACCTGATATGGCTTT 4901
Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727
|||| | | || |||||||||||||| ||| |||| || | |||||
Sbjct 4902 TCCACGTATGAATAATATAAGTTTTTGGTTATTACCTCCGGCTTTATT 4949
>seq151
Length=51439
Score = 140 bits (154), Expect = 8e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || ||||| || || || || || |||| ||||| ||| || || | || |||
Sbjct 38289 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCT 38348
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || || ||||| || || || ||||| ||||| || || ||||||||
Sbjct 38349 TCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 38408
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||||||||| || || | ||| || | |||||||| | ||||||||||
Sbjct 38409 TGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTC 38468
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|| || ||||| || || | ||| | ||||| ||
Sbjct 38469 TTCCCTGTCAACGTCTTCACGAAAATCTGCATCTT 38503
>seq1324
Length=13147
Score = 123 bits (136), Expect = 6e-23
Identities = 131/173 (76%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
||||||| ||||| || | | || | || ||||| || ||||| || || |||||
Sbjct 2106 TTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGATC 2165
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
|| || || ||||| || ||||| |||||||| || || ||||| ||||||||| ||
Sbjct 2166 AGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCACATTGTCA 2225
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTT 225698
||| |||| || | |||||||| | ||||||||||||||| ||||| || ||
Sbjct 2226 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTT 2278
>seq8419
Length=1314
Score = 116 bits (128), Expect = 9e-21
Identities = 89/104 (86%), Gaps = 1/104 (1%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
|||||||||||||||||| || |||||||||||||| | | ||||| ||||| |||||
Sbjct 265 TTCAGGATGACCAAAAAACCAAAATAAATGTTGATATAAAACCGGATCACCTCCACCTGA 206
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774
||||||| |||| |||||| ||||||||||||||||| ||||
Sbjct 205 TGGATCATAAAAAGAAGTATTTAAATTTCTATCAGTTAATAACA 162
>seq7321
Length=1495
Score = 116 bits (128), Expect = 9e-21
Identities = 89/104 (86%), Gaps = 1/104 (1%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
|||||||||||||||||| || |||||||||||||| | | ||||| ||||| |||||
Sbjct 265 TTCAGGATGACCAAAAAACCAAAATAAATGTTGATATAAAACCGGATCACCTCCACCTGA 206
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774
||||||| |||| |||||| ||||||||||||||||| ||||
Sbjct 205 TGGATCATAAAAAGAAGTATTTAAATTTCTATCAGTTAATAACA 162
>seq4289
Length=2709
Score = 116 bits (128), Expect = 9e-21
Identities = 89/104 (86%), Gaps = 1/104 (1%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
|||||||||||||||||| || |||||||||||||| | | ||||| ||||| |||||
Sbjct 265 TTCAGGATGACCAAAAAACCAAAATAAATGTTGATATAAAACCGGATCACCTCCACCTGA 206
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774
||||||| |||| |||||| ||||||||||||||||| ||||
Sbjct 205 TGGATCATAAAAAGAAGTATTTAAATTTCTATCAGTTAATAACA 162
>seq3915
Length=3058
Score = 116 bits (128), Expect = 9e-21
Identities = 89/104 (86%), Gaps = 1/104 (1%)
Strand=Plus/Plus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
|||||||||||||||||| || |||||||||||||| | | ||||| ||||| |||||
Sbjct 2794 TTCAGGATGACCAAAAAACCAAAATAAATGTTGATATAAAACCGGATCACCTCCACCTGA 2853
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774
||||||| |||| |||||| ||||||||||||||||| ||||
Sbjct 2854 TGGATCATAAAAAGAAGTATTTAAATTTCTATCAGTTAATAACA 2897
>seq1800
Length=13846
Score = 114 bits (126), Expect = 3e-20
Identities = 102/125 (82%), Gaps = 6/125 (5%)
Strand=Plus/Plus
Query 6750 AGCCTTTTCCCTTTAACT----TGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGC 6804
||||| || ||||| || ||| |||||||||||||||||||||||||| | |||||
Sbjct 13240 AGCCTCTTATCTTTAGCTGGTTTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGC 13299
Query 6805 CCAAGTCTTCTAAAAGGGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGA 6864
|||| ||| | || ||||||||||| |||| || ||||||| |||||||||||||| |
Sbjct 13300 CCAA-ACTTTTTTAAAGGCAGCAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCA 13358
Query 6865 GTAAT 6869
| |||
Sbjct 13359 GCAAT 13363
Score = 102 bits (112), Expect = 2e-16
Identities = 74/86 (86%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681
||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| |
Sbjct 9972 TAGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 10031
Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707
|||| | |||||||||||||||||||
Sbjct 10032 GTAACATGATGTATAGGGTCTGACAC 10057
>seq445
Length=30882
Score = 113 bits (124), Expect = 1e-19
Identities = 88/104 (85%), Gaps = 1/104 (1%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
|||||||||||||||||| || |||||||||||||| | | |||||| || || |||||
Sbjct 5701 TTCAGGATGACCAAAAAACCAAAATAAATGTTGATATAAAACAGGATCACCCCCACCTGA 5642
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774
||||||| |||| |||||| ||||||| ||||||||| ||||
Sbjct 5641 TGGATCATAAAAAGAAGTATTTAAATTTCGATCAGTTAATAACA 5598
>seq1605
Length=15001
Score = 111 bits (122), Expect = 4e-19
Identities = 94/116 (81%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530
|| ||||| |||||||||||||| || ||||| || || ||||| || || |||||||||
Sbjct 9515 AAAATTTGTCCATCAGTAATAGAAATTACATTAGTTGGAATATACGCTGATACATCACCT 9456
Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586
||||| ||||| | || |||||| || |||| || |||||||||| ||| ||||
Sbjct 9455 GCTTGAGTTTCTATAATAGGTAAAGCAGTTAAAGAACCACCACCAATTTTTCTATT 9400
Score = 100 bits (110), Expect = 7e-16
Identities = 102/132 (77%), Gaps = 1/132 (1%)
Strand=Plus/Plus
Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790
|| ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | |
Sbjct 12201 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 12260
Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849
|| |||||| || |||||| ||| || |||||| | || | ||||| ||| | ||
Sbjct 12261 GACTCCCGTCAATTCCTTTGAATTTCAATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 12320
Query 7850 TACGCGTTAGCT 7861
|||||||||||
Sbjct 12321 AACGCGTTAGCT 12332
>seq179
Length=63896
Score = 105 bits (116), Expect = 2e-17
Identities = 89/106 (84%), Gaps = 5/106 (5%)
Strand=Plus/Plus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTG--ATAAAGGATAGGATCGCCTCCGCCT 370729
|||||||||||||||||| || ||||||||||| |||||| ||||| ||||| |||
Sbjct 12721 TTCAGGATGACCAAAAAACCAAAATAAATGTTGGTATAAAG--CCGGATCACCTCCACCT 12778
Query 370730 GATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774
||||||||| |||| |||||| ||||||| ||||||||| ||||
Sbjct 12779 GATGGATCATAAAAAGAAGTATTTAAATTTCGATCAGTTAATAACA 12824
>seq3900
Length=3081
Score = 104 bits (114), Expect = 6e-17
Identities = 93/113 (82%), Gaps = 3/113 (3%)
Strand=Plus/Plus
Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825
|||||| ||||||||||||||||||||||| | ||||||||| || ||| | |||||
Sbjct 751 TGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAA-CTCCTACGGGAGGCAG 809
Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878
|||||| ||||||| ||||||||||| |||| ||||| || ||| |||||
Sbjct 810 CAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTGA 862
Score = 102 bits (112), Expect = 2e-16
Identities = 106/138 (77%), Gaps = 1/138 (1%)
Strand=Plus/Minus
Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784
|| || |||| ||||||| |||| ||||| || ||||||||||||| ||||||||||
Sbjct 1426 ATGTCAAGGGCTGGTAAGGTTCTGCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCT 1367
Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844
| | | | |||||| || ||||||||||||| |||||| |||| | | |||| |||
Sbjct 1366 TGTGCGGGCCCCCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGCGGA 1307
Query 7845 -ATATTTACGCGTTAGCT 7861
| || | |||||||||
Sbjct 1306 GAGTTTAATGCGTTAGCT 1289
>seq3910
Length=3064
Score = 100 bits (110), Expect = 7e-16
Identities = 101/130 (78%), Gaps = 1/130 (1%)
Strand=Plus/Minus
Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794
|||||||| ||| | |||| ||| ||||||||||||| ||||||||||| | | |
Sbjct 1583 TTGGTAAGGTTCCTCGCGTATCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCC 1524
Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CG 7853
|||||| || |||||||||| || |||||| ||||| | | ||||||| ||| ||| |
Sbjct 1523 CCCGTCAATTCCTTTGAGTTTCAATCTTGCGATCGTACTCCCCAGGTGGGATACTTATCA 1464
Query 7854 CGTTAGCTTA 7863
| || |||||
Sbjct 1463 CTTTCGCTTA 1454
>seq11141
Length=1024
Score = 95.1 bits (104), Expect = 3e-14
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| || |||||||||||||| || || || || || || |||||||| ||||| |||||
Sbjct 366 GAAAATCTGACCATCAGTAATCGAAATTACGTTAGTCGGAATATAAGCCGAAACGTCACC 307
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574
||||||||||| | | || | |||||||| ||| ||||||||
Sbjct 306 CGCTTGTGTTTCAATGATCGGAAGGGCTGTTAATGAACCACCACC 262
>seq1837
Length=8728
Score = 91.5 bits (100), Expect = 4e-13
Identities = 97/127 (76%), Gaps = 1/127 (1%)
Strand=Plus/Plus
Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795
||||||| || || ||||| || ||||||||||||| ||||||||||| | | |
Sbjct 6846 TGGTAAGGTTTTTCGCGTTGCGTCGAATTAAACCACATCCTCCACCGCTTGTGCGGGCCC 6905
Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854
|||||| || |||||||||| | |||||| |||| | | |||| || || || ||||
Sbjct 6906 CCGTCAATTCCTTTGAGTTTCACACTTGCGTGCGTACTCCCCAGGCGGGATGCTTAACGC 6965
Query 7855 GTTAGCT 7861
|||||||
Sbjct 6966 GTTAGCT 6972
>seq520
Length=38604
Score = 89.7 bits (98), Expect = 1e-12
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681
|| |||| ||| ||||| |||| ||||||||||| ||||||| ||| ||| ||||| |
Sbjct 13024 TAAGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGGCTCTGCTAAATG 12965
Query 372682 GTAAAACGATGTATAGGGTCTGAC 372705
|||| | |||||||||||||||||
Sbjct 12964 GTAACATGATGTATAGGGTCTGAC 12941
>seq373
Length=42858
Score = 87.8 bits (96), Expect = 4e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || ||||| || || || || || |||| ||||| || | || ||| | |||||
Sbjct 34216 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTACGACCATCC 34275
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
||||||||||| ||||||||||| || || || ||||| |||||||| |||
Sbjct 34276 TCTAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGCGGAATTCCT 34326
>seq9043
Length=1231
Score = 84.2 bits (92), Expect = 5e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
||| ||||| ||||||||||| |||||||| ||| |||||| ||| || || || ||
Sbjct 624 TTCTGGATGGCCAAAAAATCAAAATAAATGCTGAAAAAGGACAGGGTCACCGCCCCCAAT 565
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772
|||||| |||| | ||||| ||||| | ||| |||||||
Sbjct 564 CGGATCATAAAAAGTGGTATTTAAATTACGATCTGTTAAAA 524
>seq3534
Length=3539
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530
|| ||||| ||||| || ||||| || ||||||||||||||||| ||||| ||||||||
Sbjct 2764 AAGATTTGTCCATCGGTGATAGAAATCACATTTGTAGGGATATATGCAGAGACATCACCA 2823
Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGT 4559
|| || ||||| | | ||| || |||||
Sbjct 2824 GCCTGAGTTTCAATGATAGGCAACGCTGT 2852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192346534307684
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |