Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2528 168 2e-36 seq151 140 8e-28 seq1324 123 6e-23 seq8419 116 9e-21 seq7321 116 9e-21 seq4289 116 9e-21 seq3915 116 9e-21 seq1800 114 3e-20 seq445 113 1e-19 seq1605 111 4e-19 seq179 105 2e-17 seq3900 104 6e-17 seq3910 100 7e-16 seq11141 95.1 3e-14 seq1837 91.5 4e-13 seq520 89.7 1e-12 seq373 87.8 4e-12 seq9043 84.2 5e-11 seq3534 84.2 5e-11 >seq2528 Length=11590 Score = 168 bits (186), Expect = 2e-36 Identities = 210/288 (73%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| ||| ||| ||| | ||| || ||||||| | || || | | Sbjct 4662 AACTTTATATTTAATTTTTAGTGCATTTGCGGGTGTTGTAGGTACAACTTTATCACTTTT 4721 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || || | |||||||| || ||| |||||| || | || ||| || | || Sbjct 4722 AATTAGAATTGAATTAGCACAACCTGGTAATCAAATTTTTATGGGAAATCATCATTTATA 4781 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || ||| || | || || ||||| || || ||| |||| ||||| |||||||| | | Sbjct 4782 TAATGTTGTTGTAACTGCTCATGCTTTAGTAATGGTTTTTTTTTTAGTTATGCCTGCATT 4841 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || ||||| || ||||| || || |||||||||||||| || |||||||||||||| Sbjct 4842 AATCGGAGGTTTTGGTAATTGGTTTGTACCTTTAATGATTGGCGCACCTGATATGGCTTT 4901 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 |||| | | || |||||||||||||| ||| |||| || | ||||| Sbjct 4902 TCCACGTATGAATAATATAAGTTTTTGGTTATTACCTCCGGCTTTATT 4949 >seq151 Length=51439 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| ||| || || | || ||| Sbjct 38289 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCT 38348 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || ||||| ||||| || || |||||||| Sbjct 38349 TCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 38408 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||||| || || | ||| || | |||||||| | |||||||||| Sbjct 38409 TGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTC 38468 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || ||||| || || | ||| | ||||| || Sbjct 38469 TTCCCTGTCAACGTCTTCACGAAAATCTGCATCTT 38503 >seq1324 Length=13147 Score = 123 bits (136), Expect = 6e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| ||||| || | | || | || ||||| || ||||| || || ||||| Sbjct 2106 TTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGATC 2165 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || ||||| || ||||| |||||||| || || ||||| ||||||||| || Sbjct 2166 AGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCACATTGTCA 2225 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||| |||| || | |||||||| | ||||||||||||||| ||||| || || Sbjct 2226 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTT 2278 >seq8419 Length=1314 Score = 116 bits (128), Expect = 9e-21 Identities = 89/104 (86%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||||||||||||||| || |||||||||||||| | | ||||| ||||| ||||| Sbjct 265 TTCAGGATGACCAAAAAACCAAAATAAATGTTGATATAAAACCGGATCACCTCCACCTGA 206 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||| |||| |||||| ||||||||||||||||| |||| Sbjct 205 TGGATCATAAAAAGAAGTATTTAAATTTCTATCAGTTAATAACA 162 >seq7321 Length=1495 Score = 116 bits (128), Expect = 9e-21 Identities = 89/104 (86%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||||||||||||||| || |||||||||||||| | | ||||| ||||| ||||| Sbjct 265 TTCAGGATGACCAAAAAACCAAAATAAATGTTGATATAAAACCGGATCACCTCCACCTGA 206 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||| |||| |||||| ||||||||||||||||| |||| Sbjct 205 TGGATCATAAAAAGAAGTATTTAAATTTCTATCAGTTAATAACA 162 >seq4289 Length=2709 Score = 116 bits (128), Expect = 9e-21 Identities = 89/104 (86%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||||||||||||||| || |||||||||||||| | | ||||| ||||| ||||| Sbjct 265 TTCAGGATGACCAAAAAACCAAAATAAATGTTGATATAAAACCGGATCACCTCCACCTGA 206 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||| |||| |||||| ||||||||||||||||| |||| Sbjct 205 TGGATCATAAAAAGAAGTATTTAAATTTCTATCAGTTAATAACA 162 >seq3915 Length=3058 Score = 116 bits (128), Expect = 9e-21 Identities = 89/104 (86%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||||||||||||||| || |||||||||||||| | | ||||| ||||| ||||| Sbjct 2794 TTCAGGATGACCAAAAAACCAAAATAAATGTTGATATAAAACCGGATCACCTCCACCTGA 2853 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||| |||| |||||| ||||||||||||||||| |||| Sbjct 2854 TGGATCATAAAAAGAAGTATTTAAATTTCTATCAGTTAATAACA 2897 >seq1800 Length=13846 Score = 114 bits (126), Expect = 3e-20 Identities = 102/125 (82%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 6750 AGCCTTTTCCCTTTAACT----TGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGC 6804 ||||| || ||||| || ||| |||||||||||||||||||||||||| | ||||| Sbjct 13240 AGCCTCTTATCTTTAGCTGGTTTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGC 13299 Query 6805 CCAAGTCTTCTAAAAGGGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGA 6864 |||| ||| | || ||||||||||| |||| || ||||||| |||||||||||||| | Sbjct 13300 CCAA-ACTTTTTTAAAGGCAGCAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCA 13358 Query 6865 GTAAT 6869 | ||| Sbjct 13359 GCAAT 13363 Score = 102 bits (112), Expect = 2e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 9972 TAGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 10031 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 10032 GTAACATGATGTATAGGGTCTGACAC 10057 >seq445 Length=30882 Score = 113 bits (124), Expect = 1e-19 Identities = 88/104 (85%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||||||||||||||| || |||||||||||||| | | |||||| || || ||||| Sbjct 5701 TTCAGGATGACCAAAAAACCAAAATAAATGTTGATATAAAACAGGATCACCCCCACCTGA 5642 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||| |||| |||||| ||||||| ||||||||| |||| Sbjct 5641 TGGATCATAAAAAGAAGTATTTAAATTTCGATCAGTTAATAACA 5598 >seq1605 Length=15001 Score = 111 bits (122), Expect = 4e-19 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||| |||||||||||||| || ||||| || || ||||| || || ||||||||| Sbjct 9515 AAAATTTGTCCATCAGTAATAGAAATTACATTAGTTGGAATATACGCTGATACATCACCT 9456 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | || |||||| || |||| || |||||||||| ||| |||| Sbjct 9455 GCTTGAGTTTCTATAATAGGTAAAGCAGTTAAAGAACCACCACCAATTTTTCTATT 9400 Score = 100 bits (110), Expect = 7e-16 Identities = 102/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 12201 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 12260 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| || |||||| | || | ||||| ||| | || Sbjct 12261 GACTCCCGTCAATTCCTTTGAATTTCAATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 12320 Query 7850 TACGCGTTAGCT 7861 ||||||||||| Sbjct 12321 AACGCGTTAGCT 12332 >seq179 Length=63896 Score = 105 bits (116), Expect = 2e-17 Identities = 89/106 (84%), Gaps = 5/106 (5%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTG--ATAAAGGATAGGATCGCCTCCGCCT 370729 |||||||||||||||||| || ||||||||||| |||||| ||||| ||||| ||| Sbjct 12721 TTCAGGATGACCAAAAAACCAAAATAAATGTTGGTATAAAG--CCGGATCACCTCCACCT 12778 Query 370730 GATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||||| |||| |||||| ||||||| ||||||||| |||| Sbjct 12779 GATGGATCATAAAAAGAAGTATTTAAATTTCGATCAGTTAATAACA 12824 >seq3900 Length=3081 Score = 104 bits (114), Expect = 6e-17 Identities = 93/113 (82%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||||||||||||| | ||||||||| || ||| | ||||| Sbjct 751 TGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAA-CTCCTACGGGAGGCAG 809 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 |||||| ||||||| ||||||||||| |||| ||||| || ||| ||||| Sbjct 810 CAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTGA 862 Score = 102 bits (112), Expect = 2e-16 Identities = 106/138 (77%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || |||| ||||||| |||| ||||| || ||||||||||||| |||||||||| Sbjct 1426 ATGTCAAGGGCTGGTAAGGTTCTGCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCT 1367 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 | | | | |||||| || ||||||||||||| |||||| |||| | | |||| ||| Sbjct 1366 TGTGCGGGCCCCCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGCGGA 1307 Query 7845 -ATATTTACGCGTTAGCT 7861 | || | ||||||||| Sbjct 1306 GAGTTTAATGCGTTAGCT 1289 >seq3910 Length=3064 Score = 100 bits (110), Expect = 7e-16 Identities = 101/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794 |||||||| ||| | |||| ||| ||||||||||||| ||||||||||| | | | Sbjct 1583 TTGGTAAGGTTCCTCGCGTATCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCC 1524 Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CG 7853 |||||| || |||||||||| || |||||| ||||| | | ||||||| ||| ||| | Sbjct 1523 CCCGTCAATTCCTTTGAGTTTCAATCTTGCGATCGTACTCCCCAGGTGGGATACTTATCA 1464 Query 7854 CGTTAGCTTA 7863 | || ||||| Sbjct 1463 CTTTCGCTTA 1454 >seq11141 Length=1024 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || |||||||||||||| || || || || || || |||||||| ||||| ||||| Sbjct 366 GAAAATCTGACCATCAGTAATCGAAATTACGTTAGTCGGAATATAAGCCGAAACGTCACC 307 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 ||||||||||| | | || | |||||||| ||| |||||||| Sbjct 306 CGCTTGTGTTTCAATGATCGGAAGGGCTGTTAATGAACCACCACC 262 >seq1837 Length=8728 Score = 91.5 bits (100), Expect = 4e-13 Identities = 97/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| || || ||||| || ||||||||||||| ||||||||||| | | | Sbjct 6846 TGGTAAGGTTTTTCGCGTTGCGTCGAATTAAACCACATCCTCCACCGCTTGTGCGGGCCC 6905 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATTTACGC 7854 |||||| || |||||||||| | |||||| |||| | | |||| || || || |||| Sbjct 6906 CCGTCAATTCCTTTGAGTTTCACACTTGCGTGCGTACTCCCCAGGCGGGATGCTTAACGC 6965 Query 7855 GTTAGCT 7861 ||||||| Sbjct 6966 GTTAGCT 6972 >seq520 Length=38604 Score = 89.7 bits (98), Expect = 1e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 || |||| ||| ||||| |||| ||||||||||| ||||||| ||| ||| ||||| | Sbjct 13024 TAAGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGGCTCTGCTAAATG 12965 Query 372682 GTAAAACGATGTATAGGGTCTGAC 372705 |||| | ||||||||||||||||| Sbjct 12964 GTAACATGATGTATAGGGTCTGAC 12941 >seq373 Length=42858 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| || | || ||| | ||||| Sbjct 34216 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTACGACCATCC 34275 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 ||||||||||| ||||||||||| || || || ||||| |||||||| ||| Sbjct 34276 TCTAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGCGGAATTCCT 34326 >seq9043 Length=1231 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||||||||| |||||||| ||| |||||| ||| || || || || Sbjct 624 TTCTGGATGGCCAAAAAATCAAAATAAATGCTGAAAAAGGACAGGGTCACCGCCCCCAAT 565 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 |||||| |||| | ||||| ||||| | ||| ||||||| Sbjct 564 CGGATCATAAAAAGTGGTATTTAAATTACGATCTGTTAAAA 524 >seq3534 Length=3539 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||| ||||| || ||||| || ||||||||||||||||| ||||| |||||||| Sbjct 2764 AAGATTTGTCCATCGGTGATAGAAATCACATTTGTAGGGATATATGCAGAGACATCACCA 2823 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGT 4559 || || ||||| | | ||| || ||||| Sbjct 2824 GCCTGAGTTTCAATGATAGGCAACGCTGT 2852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192346534307684