Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq413 138 9e-28 >seq413 Length=60602 Score = 138 bits (152), Expect = 9e-28 Identities = 172/232 (74%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 |||||||||||||||| || || || || || || || | | || | |||||| || Sbjct 13921 AGCGGTTCCACGTGGTTCAGATACACATGCGCGTCACCAATGACATGAATAAACTCGCCG 13980 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 |||| | || | || || |||| | | ||| || || | |||||||||||| || Sbjct 13981 GGTTTCAAACCTGCCACCTGTGCCACTAAGCGCGTTAGCAGCGCGTAGCTGGCGATATTG 14040 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 || || || |||||||||||||| |||| | |||||| | ||||||||| | ||| ||| Sbjct 14041 AATGGGACGCCGAGCCCCATGTCAGCTGAGCGCTGGTACATCTGGCACGACAACTCACCG 14100 Query 29828 TC-GCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATG 29875 || ||| ||||||||||||| ||||| |||||||| || || |||||| Sbjct 14101 TCAGCT-ACGTAAAACTGACAGAACATG---TGGCACGGCGGCAGCGCCATG 14148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406103372922196