Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq7203 251 6e-62 seq4369 168 6e-37 seq732 132 4e-26 >seq7203 Length=1522 Score = 251 bits (278), Expect = 6e-62 Identities = 515/756 (68%), Gaps = 21/756 (3%) Strand=Plus/Plus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 |||||| |||||||||||| ||| || |||||||||||||| |||||||||| ||| Sbjct 664 AACACCCGCTTTTTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCTTGTAA 723 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGT-AATGTTTTTCACACTTTA 4365 |||||| | ||||| ||||| || ||||| || || || | ||| || || || | || Sbjct 724 CGAAATCATATCCATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACTC-CTA 782 Query 4366 GAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAA 4425 | | | | | | || || ||||| || || || |||| ||| |||||| || | Sbjct 783 ATGATTCCAAAAGGTGATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGCATTCA 842 Query 4426 TTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTT 4485 | ||||| || ||||||||||| | || | || |||| ||| || ||| || | Sbjct 843 TGCCAATCAACGAAACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTACTGCAT 902 Query 4486 CTGTGATTATATCTTTTATTTT---ATCTTTAGA-TGGTT---TATTTACTAAGTATCCA 4538 || | | || ||| | ||||| | | | | | ||| || || | ||||| Sbjct 903 CTTTCACTAAATCGTAGATTTTCTGAGGGTCATACTTGTTCTGAATGTAATTAGTAT--- 959 Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAA 4598 | || ||||| ||||| |||| || || ||||| || | ||| | || ||||| Sbjct 960 -ATAACAAACAGGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATTAGAG 1018 Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658 || || | || ||||||||||| | ||||| | ||| ||||| | | ||||| || Sbjct 1019 AATGTAAGACCCGGCATTAAACCACGTTTTTTCAACCAGAATATCGAGCAGAATGAGCCT 1078 Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT 4718 || ||||| || |||||||| ||||||| |||| | ||| | | || | | Sbjct 1079 GAGAAGAAAATACCTTCTACAACGGCAAATGCTAACAGGCGG---TCAATAAAGTTTCCG 1135 Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTAT 4778 || || |||||| || ||||| | ||||||||||| || |||||||| || | Sbjct 1136 TTATC---AATCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGGAATATGGTCT 1192 Query 4779 ATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGG 4838 || || |||| | |||| | |||| ||||||| ||||||| || || || || Sbjct 1193 ATGGCATTAAGCATTTTATCTCGCTCAACAGGGTCTTTGATATAAGAATCAATCAGAAGC 1252 Query 4839 CTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCT 4898 || |||| ||||| || ||||| || |||||| || || || || ||| | ||| Sbjct 1253 GAGTAAGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATAGAAACATTTTGCT 1312 Query 4899 TCTGTTACTTGAACTTCGTTACA-AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTC 4957 || | | ||| || || | | ||| | || | |||||||| || || ||||| || Sbjct 1313 TCGGCAAATTGTAC-ACGAGAGATAAAATTGACTGCCAAGTTTTCATTAACGATACCATC 1371 Query 4958 ACTGGCTGCAAAAAACGCCAAAACATGAGATATAAA 4993 | || |||||||||||||| |||||||| ||||| Sbjct 1372 AGAAGCAGCAAAAAACGCCAATACATGAGAAATAAA 1407 >seq4369 Length=2652 Score = 168 bits (186), Expect = 6e-37 Identities = 390/582 (67%), Gaps = 8/582 (1%) Strand=Plus/Minus Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 |||||||||||||| | |||||||| | ||||| ||| ||||| || || || || Sbjct 2617 GCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACCT 2558 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 ||||||||||| | ||||| | |||| | |||| || | || || |||||||| Sbjct 2557 GGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATATC 2498 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATC 4730 || || || || || || ||| | ||| | | | || |||| ||| Sbjct 2497 CCCTCCACCGCCATGAAGGC----AAT-GAGACGCTCAGCAAATGTACCC-TCTTCTATC 2444 Query 4731 CATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAAT 4790 || || | |||||| || ||||| ||| || | ||||| || | || || | |||| Sbjct 2443 CACTTCAGTGCCCATTTTGCTTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGAAAT 2384 Query 4791 AATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCA 4850 || || ||||| | | || | |||||| || || || | || || | ||| Sbjct 2383 AACTTGGCCTTTTCTACCGCATCATTAATATATGTATCAATCAAGAGAGAGTAAGTCTCA 2324 Query 4851 GAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGA 4910 | |||||| ||||| || ||||||||||| || | || | || || | || || Sbjct 2323 GCATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCTGC 2264 Query 4911 ACTTCGTT-ACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAA 4969 || || || | ||||| | | ||| ||| || |||||||| || || || ||||| Sbjct 2263 ACCTCTTTCATAAAAT-TCACAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCAAA 2205 Query 4970 AAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGG 5029 |||||||||| ||| || || || | ||| ||| || || ||||||| | | Sbjct 2204 GAACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCCGC 2145 Query 5030 CAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA 5089 || || | | ||||||| ||||||| |||||||||| |||||||| |||||||| || Sbjct 2144 AAAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTATA 2085 Query 5090 CATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 || ||| |||||| || || || ||| || |||||| Sbjct 2084 CAACTGCCATATATCATCATGCTTGATGGGATATAGGACAAA 2043 >seq732 Length=22061 Score = 132 bits (146), Expect = 4e-26 Identities = 562/874 (64%), Gaps = 14/874 (2%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 || ||||| ||||| || || || ||||| | | ||| || | ||||| | ||||| Sbjct 8687 ACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGCGAGATCATGTCCATCCAGTCAAAT 8746 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGC---TACAAGCAATCGGTCAGCT 4388 || || |||| | | || | || |||| |||| ||||| || ||||| ||| Sbjct 8747 GGGTTCTTTGCATGGAAAA-TCTTCGACACGCC-GAGCGAGTACAA-CAGGCGGTCCGCT 8803 Query 4389 ACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCA-CAGGTAG 4447 ||||| || || ||||||| |||||| | |||| || ||||| | |||| | || || Sbjct 8804 ACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCAATCAG-CTCAACGGGCAG 8862 Query 4448 CGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTT--ATT 4505 || || || |||||| || || || || || || || | || | ||| | | | Sbjct 8863 CGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTC-GCGAATG-ATCGTGTGGACG 8920 Query 4506 TTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGC 4565 || | | | || || |||| | ||| | |||||||| || ||| Sbjct 8921 CGGTCCTCGGGCAGCTTGTTCACTAGCTTGGAGTACATGAGGCACGCAAAGTCCGTGTGC 8980 Query 4566 AAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTC 4625 | || || |||| ||||| || ||||| || || | | || ||||| | ||| | | Sbjct 8981 ATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCGCGC 9040 Query 4626 TTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCA 4685 || || |||||||| || | | || || || || ||||| |||||||| || | |||| Sbjct 9041 TTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGAGGCA 9100 Query 4686 AACGCTACTAATCGGGACCCGAACGAGCTGGCTT-TGTCTTTAATCCATTTTAATGCCCA 4744 || || | | || | || |||| ||| || | | ||| || | ||||| Sbjct 9101 AATGCCAGCAGCCGCTCCGCGTACGAAGATACTTGTGGGTCGCA-CCACTTGAGCGCCCA 9159 Query 4745 GTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTC 4804 || ||||| || ||| ||||| || || | || ||| | | | | || || Sbjct 9160 ATTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGGTGATCCTTCTC 9219 Query 4805 AAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTC 4864 | |||| ||| || ||||| || || || ||| | ||| || || || ||||| Sbjct 9220 CGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGATGTTTTC 9279 Query 4865 TATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAA 4924 || || ||||| || || |||||||| | |||||| | ||||| ||||| || | ||| Sbjct 9280 AATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCACTTCATTGCTAAA 9339 Query 4925 TCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATG 4984 | | | || ||||| || || || |||||||||||||| || || | ||||| Sbjct 9340 GTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAGAAGGCGAGCACATG 9399 Query 4985 AGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAA 5044 ||||||| | || | | | || || ||||| | ||| | || Sbjct 9400 CTTGATAAAGTGACGCTCATTGTCCGTGAGGTTCGCCCAGTCCTTGAGATCGTGCACCAA 9459 Query 5045 ATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATC 5104 || | || ||| ||||||| ||||| |||||||| || |||||||| ||| | || Sbjct 9460 GTCTAGCTCCTCAGCAGTCCAGAACGAAGCTTCCGCCTTCTTGTACATCTGCCACACGTC 9519 Query 5105 AGGATACTGAATCGGAAGTATGACAAATCTGTTG 5138 | | || ||||||| | ||||| | |||| Sbjct 9520 GTGCTCTTGGATCGGAAAGAGCACAAAGCGGTTG 9553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426986696394638