Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq413 170 1e-37 >seq413 Length=60602 Score = 170 bits (188), Expect = 1e-37 Identities = 399/592 (67%), Gaps = 14/592 (2%) Strand=Plus/Plus Query 27142 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 27201 |||||||||||||| | ||| || || || ||||| || | | || | |||||| || Sbjct 13921 AGCGGTTCCACGTGGTTCAGATACACATGCGCGTCACCAATGACATGAATAAACTCGCCG 13980 Query 27202 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 27261 |||| | || | || || |||| | | ||| || || | |||||||||||| || Sbjct 13981 GGTTTCAAACCTGCCACCTGTGCCACTAAGCGCGTTAGCAGCGCGTAGCTGGCGATATTG 14040 Query 27262 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCA 27321 || || || |||||||||||||| | || | |||||| | ||| ||||| | ||| || Sbjct 14041 AATGGGACGCCGAGCCCCATGTCAGCTGAGCGCTGGTACATCTGGCACGACAACTCACCG 14100 Query 27322 TCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 || ||||||||||||||| | ||||||||| || || |||||| | || Sbjct 14101 TCAGCTACGTAAAACTGACAGAACATGTGGCACGGCGGCAGCGCCATGTCATTAAGATCA 14160 Query 27382 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGG 27438 || |||||||| ||| | ||| || | || ||||| ||| || || | Sbjct 14161 GCCGGATTCCAGGCCGACAGCACGATACGGCGATCAGAAGGGTTTGTCCGGAGTTTGTGT 14220 Query 27439 TCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGT 27497 ||| | || ||||| ||||| || || | ||||| | |||||| || Sbjct 14221 ATCAC----CTCAGCGAGCTGGTCCACGCCTTGGCCTGTATAGTCGGCATGCATGTCGGT 14276 Query 27498 GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 27557 ||||| ||| |||||||| | ||| ||||| || || || ||||| |||||||| | || Sbjct 14277 GTACTTTGCACCGAAATGACGCCACTGGAAACCATATACTGGTCCAAGGTCTCCTACCTC 14336 Query 27558 CCTGTG-CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 27616 || ||| || ||||| || |||||| | || | || || || |||||||||| Sbjct 14337 CC-GTGACTGTAAGCCTCTACTGTCCAGGTACTCACGCGATCCATTACCGTCCCAGATAC 14395 Query 27617 TTACCCCCTTCTCGGAGAGC-TCTTTGGAGT-TTGTGGACCCTCTGACGAACCACAGCAG 27674 || || || | ||| | | || | | ||| ||||| | | |||||||||||| Sbjct 14396 GGACACCTTTTTGCTGTAGCGTGTGTGCACTCGTGT-CACCCT-TAATGAACCACAGCAG 14453 Query 27675 CTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 27726 |||||| | || | ||| || || | ||| ||||| || | |||||| Sbjct 14454 CTCCTCAGCCACACCTCGCCAGAACACGCGCTTCGTCGTCAGCAACGGAAAC 14505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369452772282266