Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq7802 134 4e-27 seq4651 100 9e-17 >seq7802 Length=1410 Score = 134 bits (148), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 33994 CGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGG---TGTCCGGGTGATAG 34050 |||||||| ||||||| | ||| |||| ||| | | | | | ||| || ||| Sbjct 765 CGGTGCTTGCCGATGATGATCTCGGCCAGGCCCTTATCCGGCGAATTTTCCTTGTTGTAG 824 Query 34051 ACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCG 34110 ||||| ||||| | ||| | ||||| |||||||||||||||||| || ||||| ||| Sbjct 825 TAATCGTCGCGGTAGATGAAGACGATCATGTCGGCGTCCTGCTCGATTGCGCCGGATTCG 884 Query 34111 CGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAGCTGC 34170 |||| ||| | ||||| ||| ||||||| | || ||||| ||||||||||||||| Sbjct 885 CGCAAGTCGGCCATCACCGGGCGCTTGTCGGTACGGGTTTCCAGCGAGCGGTTGAGCTGC 944 Query 34171 GACAGCACGATCACGGGGATACCAAGCTCCATGGCCAG 34208 |||||| | ||||| || | | || ||| ||||||| Sbjct 945 GACAGCGCAATCACCGGCACATTGAGTTCCTTGGCCAG 982 >seq4651 Length=2439 Score = 100 bits (110), Expect = 9e-17 Identities = 125/171 (73%), Gaps = 8/171 (5%) Strand=Plus/Plus Query 33987 GCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCG----CGGTACTGGGTGTCCG 34042 |||||| || ||||| ||||| || | ||| ||| || | | |||| |||| Sbjct 800 GCCGTTACGCTGCTTGGCGATAATGATCTCCGCCGTCCCTTTTTCAGCACTG----TCCG 855 Query 34043 GGTGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCC 34102 ||| ||| |||||| ||||| ||||||||||||| ||||| || || || ||||| | Sbjct 856 GGTTGTAGTACTCGTCACGGTATACGAACATGATCAAATCGGCATCTTGTTCAATCGCGC 915 Query 34103 CGGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCA 34153 | || ||||||| ||| ||||| ||| ||||||| ||||| || |||| Sbjct 916 CAGATTCGCGCAAGTCACTCATCACCGGACGCTTGTCAGGCCGTTGATCCA 966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160440970006140