Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq8929 159 5e-34 seq3145 98.7 2e-15 seq9038 95.1 2e-14 >seq8929 Length=1248 Score = 159 bits (176), Expect = 5e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 202540 GAAAAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTT 202599 |||||| ||||| ||||| |||||||||||| | ||||||| |||||||| || Sbjct 858 GAAAAGTCCGACCGCACCGGTACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGCTTC 917 Query 202600 GACCTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATT 202659 || || || | ||||| || ||||| ||||| || ||| | || || || || ||||| Sbjct 918 GATCTCACTGCCGGCTTTCCGCTGGTCACCACCAAGAAGCTGCATCTGCGCTCGATCATC 977 Query 202660 CACGAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGG 202719 ||||||||||||||||| ||| | || || ||||||||| | || ||||| || ||| | Sbjct 978 CACGAGCTGCTGTGGTTTCTGCAGGGCGATACCAACATCGGGTATCTGAAAGACAACCAG 1037 Query 202720 GTCACTATCTGGGACGAATGGGC 202742 || |||||||||||||||||| Sbjct 1038 GTGCGTATCTGGGACGAATGGGC 1060 >seq3145 Length=4143 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 202521 CGTCCTCTCATTCGGTCATGAAAAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTT 202580 ||| ||| || ||| || | || | ||||||||||||||||| ||| || |||| Sbjct 494 CGTACTCGCACACGGGCACCAGAAAACCGACCGTACCGGCACCGGGACGATTTCGGTGTT 553 Query 202581 CGGGGCCCAGATGCGGTTTGACCTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGT 202640 || ||||||||| ||| ||||| | ||||| ||||| || |||| || ||||| || Sbjct 554 TGGCTACCAGATGCGATTTAACCTGGCAGAAGGATTCCCGCTACTGACGACTAAAAAAGT 613 Query 202641 TCACCTCCGTTCTATCATTCACGAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAG 202700 || | || || || |||||| || | ||||| | ||||| |||||| || Sbjct 614 CCATTTGAAATCCATTATCCACGAGTTGTTATGGTTTTTAAAAGGCAGCACCAATATTGC 673 Query 202701 TTACCTGAACGATAACGGGGTCACTATCTGGGACGAATGGGC 202742 || | || || ||||| || | |||||||| || ||||| Sbjct 674 CTATTTAAAAGAAAACGGCGTGAAAATCTGGGATGAGTGGGC 715 >seq9038 Length=1232 Score = 95.1 bits (104), Expect = 2e-14 Identities = 83/102 (81%), Gaps = 5/102 (5%) Strand=Plus/Minus Query 2243 GTAAAAGAATTCTGGCGGGTTACTCAAGCGGC-AACGAGAGCAGACTGTAAATCTGTTGA 2301 ||||||| |||| ||| ||| |||||||| |||| | |||||||||||||||| || Sbjct 962 GTAAAAG----CTGGAGGGATACCCAAGCGGCCAACGGGGGCAGACTGTAAATCTGCTGG 907 Query 2302 CTTCGGTCTTCGGTGGTTCGAGTCCACCACACGCCACCAGTT 2343 ||| | |||||||||||||| |||||| | | ||||||||| Sbjct 906 CTTACGCCTTCGGTGGTTCGAATCCACCTCCCTCCACCAGTT 865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788200904556000