Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq7203 284 2e-71 seq4369 147 3e-30 seq75 102 1e-16 >seq7203 Length=1522 Score = 284 bits (314), Expect = 2e-71 Identities = 601/886 (68%), Gaps = 32/886 (4%) Strand=Plus/Plus Query 47826 TCTTCTTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTA 47885 |||| ||||||||||| ||| |||||| |||||||| |||||||| ||||| ||||| Sbjct 650 TCTTTCTGAGACATAACACCCGCTTTTTGGTATTCACCTACACGTTTTTCGAAGAAATTG 709 Query 47886 GTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtt 47945 |||||||||| || || || | ||||| ||||| || ||||| |||||||||||| Sbjct 710 GTTTTGCCTTGTAACGAAATCATATCCATGAAATCGAAAGGATTGGTCGCATTATAAATT 769 Query 47946 tttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATC 48005 || |||| ||||||| | | || ||| || || || || || ||| ||| Sbjct 770 TTATTAACTCCTAATGATTCCAAAAGGTGATCGGCCACAAACTCAATGTATTGGCACATT 829 Query 48006 ATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCG 48065 | ||| |||||| || || | ||| ||||| || || || | || |||| |||| Sbjct 830 AGTTCGGCATTCATGCCAATCAACGAAACAGGTAGCGCATCAGTTACGAATTCTTTTTCG 889 Query 48066 ATAGTGACAGCATC---CACT--ATTATCGATGTT-ACCGTTTCCTCACTTG--GTGGAT 48117 || || ||||| |||| || | ||| || | || | ||||| || || Sbjct 890 ATTTCTACTGCATCTTTCACTAAATCGTAGATTTTCTGAGGGTCAT-ACTTGTTCTGAAT 948 Query 48118 ACAACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAA 48177 || | | | ||| ||||| ||||| |||| || | |||||||| | | || Sbjct 949 GTAATTAGTATATAA----CAAACAGGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAA 1004 Query 48178 TTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTG 48237 |||| || ||||| ||||| ||||| ||||||| ||||||||||| | ||| ||||| | Sbjct 1005 TTAACTCATTAGAGAATGTAAGACCCGGCATTAAACCACGTTTTTTCAACCAGAATATCG 1064 Query 48238 CCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTC 48297 ||| || || || ||||| || |||||||| | |||||||| ||| | || Sbjct 1065 AGCAGAATGAGCCTGAGAAGAAAATACCTTCTACAACGGCAAATGC--TAACAGGCGGTC 1122 Query 48298 CGTAACTGGCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAG 48357 ||| | | |||| | ||||| || |||||||| || || ||||||||||| | Sbjct 1123 AATAA-AGTTTCCGTTATCAATCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACG 1181 Query 48358 GCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCT-------ATCTTTAACG 48410 | || ||||| ||||||| | |||| || | ||| ||||| | Sbjct 1182 GAATATGGTCTATGGCATTAAGCA------TTTTATC-TCGCTCAACAGGGTCTTTGATA 1234 Query 48411 TAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAAT 48470 |||| ||| || | ||| || |||| || ||||| ||||| || ||||| || Sbjct 1235 TAAGAATCAATCAGAAGCGAGTAAGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAA 1294 Query 48471 CCGTAAAAACATCTCGCTTCTGTGATCTGTAC-CTCCGTACAAAATCGTTCAGCCAAATT 48529 || || |||||| | ||||| | | ||||| | | ||||| | | ||||| || Sbjct 1295 CCATAGAAACATTTTGCTTCGGCAAATTGTACACGAGAGATAAAATTG-ACTGCCAAGTT 1353 Query 48530 CTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTT 48589 ||||| || || |||||| |||||||||||| || |||||||| |||||||| Sbjct 1354 TTCATTAACGATACCATCAGAAGCAGCAAAAAACGCCAATACATGAGAAATAAAATGACG 1413 Query 48590 TTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGC 48649 || |||| | | |||||| || | ||| ||||| |||| |||||| || Sbjct 1414 CTCACCATCGCTCAGGCTTTCCCAGTCTTTCAAATCCGGTGATAGGTCTATTTCTTCGGC 1473 Query 48650 TGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCA 48695 |||||| ||||| ||||| ||||||||| | | ||| |||||| Sbjct 1474 TGTCCAGAATGAAGCCTCATGTTTTTTATAAAATTGCCAGATATCA 1519 >seq4369 Length=2652 Score = 147 bits (162), Expect = 3e-30 Identities = 369/555 (66%), Gaps = 7/555 (1%) Strand=Plus/Minus Query 48143 TGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACC 48202 ||||||||||||||| | ||||| || | | ||| ||||| ||||| || || | ||| Sbjct 2618 TGCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACC 2559 Query 48203 GGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATAT 48262 ||||||| ||||||||||| | |||| | || | ||||| || || |||||||| Sbjct 2558 TGGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATAT 2499 Query 48263 GCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCA 48322 || || || ||| || || | || | ||| | | | | || | |||||| Sbjct 2498 CCCCTCCACCGCCATGAAGGCAATGAGACGCTCAGCAAATGTACCCTCTTC---TATCCA 2442 Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 | ||||||| | || |||||| | || || || |||| || | ||| | Sbjct 2441 CTTCAGTGCCCATTTTGCTTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGAAATAA 2382 Query 48383 AAAGtttttttC-ATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGG 48441 | ||||| | || ||| |||| || ||||| || || ||| || | || | Sbjct 2381 CTTGGCCTTTTCTACCGC-ATCATTAATATATGTATCAATCAAGAGAGAGTAAGTCTCAG 2323 Query 48442 AGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTA 48501 || || ||||| || ||||||||||| || | ||| | || || | | ||| | Sbjct 2322 CATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCTGCA 2263 Query 48502 CCTCCGT-ACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAA 48560 |||| | | ||||| |||| | |||||||||||||| ||||| ||| ||||| Sbjct 2262 CCTCTTTCATAAAATTCA-CAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCAAAG 2204 Query 48561 AATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTG 48620 || || || | ||| ||| |||| | |||| | | | || | ||||| || Sbjct 2203 AACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCCGCA 2144 Query 48621 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATAC 48680 | || | || | ||| | ||||||||| |||||||| || || || |||||||||||| Sbjct 2143 AAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTATAC 2084 Query 48681 ATATTCCATATATCA 48695 | | |||||||||| Sbjct 2083 AACTGCCATATATCA 2069 >seq75 Length=61118 Score = 102 bits (112), Expect = 1e-16 Identities = 749/1190 (63%), Gaps = 22/1190 (2%) Strand=Plus/Plus Query 77419 CGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACG 77478 |||| || || || ||||| || |||||||| || || | |||| || ||||||| Sbjct 21100 CGTAGTAGATCGTCTCGAAGATGTTCTTATTCAGCTCCCGCGCTTGCTCGCTTTCAAACG 21159 Query 77479 GATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTAT 77538 || | | |||||||| ||||| || | ||||| || ||||| || | || | | Sbjct 21160 CGTAGTTCATGAGAATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGT 21219 Query 77539 GTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTAT 77598 | | | | ||||| | |||||||| || || || ||||| | || || | || | Sbjct 21220 GGCGCATGTTGGACGTGCGAGCTTCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGT 21279 Query 77599 TGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCAT 77658 | || || | || || | |||||| | || || ||| ||| || | Sbjct 21280 TCAGGTTACGCGTCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCGT 21339 Query 77659 CTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAG-CG 77717 || ||||||| || || |||| || || | |||||| || || || |||| | || Sbjct 21340 CTTCAACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCG 21399 Query 77718 TTGGCATATTGTATTA--TCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTT 77775 | | | | || | || | | ||| || ||||| | ||| ||||| || || | Sbjct 21400 ACGTGA-ACTCCATCACTTCACAGCACA-AG-TTACTGGACCGGATCGTGCCAAGGTTCT 21456 Query 77776 GTTGGTTGCTCTTTTTATTGCA-TGAGTCCTTATAAAGAATAAACGG-AGTCCCGGTTTC 77833 | ||||| | ||| | || || |||||||| || ||||| || | ||||| |||| Sbjct 21457 GCTGGTT-CGATTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCG-TTTC 21514 Query 77834 AATCTGTGATTCGATAATAGATTTCCAGACGACTCTAG-CTTTTATCATAGATTTGTATC 77892 |||||| | || | || | ||| | | || | | || ||| | || | | Sbjct 21515 AATCTGCGCATCCAAGATCGCAAACCACA-GCTGCTGGGCATTGATCGTC--TTCCTCGC 21571 Query 77893 GCCTCTCTCTT--TCATA--TTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCA 77948 | || ||||| || || || || | || | ||||| || || ||||| || Sbjct 21572 CCGTCCCTCTTGTTCGTACTTTTCATACAAAGTC--TCAAACTCGTCGCCCCAGTACTCG 21629 Query 77949 TCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGT 78008 | || || || ||||||||| || | ||| ||| | ||||| | | | || ||| Sbjct 21630 TACAGCCCTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGT 21689 Query 78009 TTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCA 78068 ||||| || ||||| |||| ||| | |||| || | || || | | ||| |||| Sbjct 21690 TTCATGAATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCA 21749 Query 78069 TTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 78128 || || ||| || | |||||||||||| | | || | ||||| ||||| | Sbjct 21750 TTGCCATGATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAG 21809 Query 78129 TATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTA 78188 || || || | ||| ||||| || || ||||| | |||| || |||| | Sbjct 21810 TAGATCGCAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCA 21869 Query 78189 TTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 ||| | || | | ||| || ||||| ||||| || | ||||| || || ||| || Sbjct 21870 TTAAACACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGAATGTAG 21929 Query 78249 CTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATT 78308 || | || || ||||| || || || || ||||||||| || || || Sbjct 21930 CTATTCGTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATG 21989 Query 78309 AGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT-GTTAAG 78367 || || ||||||| ||||| ||||| || || || ||||| |||| | || Sbjct 21990 CACGCACATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAAT 22049 Query 78368 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGC 78427 || ||| || ||||| ||| | || || || |||||||| | ||||| | || Sbjct 22050 AA-AAAGCACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGC 22108 Query 78428 ATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCA 78487 ||| ||||| | || | || | || | |||||||| | || | |||||| Sbjct 22109 ATGGGTAAAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTG 22168 Query 78488 TTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATT 78547 || ||| || || | ||| || || | | ||| || || || | ||| || ||| Sbjct 22169 TTTATGGATGCCAATCGCGACTCGTAAAATCATCTGTTGCGGCCGTTCGACGACTTTACC 22228 Query 78548 ATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGT 78597 || | ||||| || | ||| | |||||||| |||||||||| Sbjct 22229 GTTGACCCGAAACAAATAACCTCGTTCGAGGGTTTTAAACCCAAAATAGT 22278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694563852911040