Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq7203 329 5e-85 seq4369 185 1e-41 seq732 161 1e-34 seq75 122 1e-22 >seq7203 Length=1522 Score = 329 bits (364), Expect = 5e-85 Identities = 608/881 (69%), Gaps = 22/881 (2%) Strand=Plus/Plus Query 46315 TCTTCTTGTGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTA 46374 |||| || |||||||| ||| |||||||||||||||||||||||| ||||| ||||| Sbjct 650 TCTTTCTGAGACATAACACCCGCTTTTTGGTATTCACCTACACGTTTTTCGAAGAAATTG 709 Query 46375 GTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtt 46434 |||||||||| || || || | ||||| ||||| || ||||| || ||||||||||| Sbjct 710 GTTTTGCCTTGTAACGAAATCATATCCATGAAATCGAAAGGATTGGTCGCATTATAAATT 769 Query 46435 tttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATC 46494 || |||| ||||||| | | || ||| || || || || || || ||| Sbjct 770 TTATTAACTCCTAATGATTCCAAAAGGTGATCGGCCACAAACTCAATGTATTGGCACATT 829 Query 46495 ATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCA 46554 | ||| |||||| || || | || ||||| || || || | || |||| ||| Sbjct 830 AGTTCGGCATTCATGCCAATCAACGAAACAGGTAGCGCATCAGTTACGAATTCTTTTTCG 889 Query 46555 ATAGTGACAGCATC-----CGATATTATCGATGTTACTGTT--TCCTCACTTGGTGGATG 46607 || || ||||| | | || | ||| || ||| || | ||||| | || Sbjct 890 ATTTCTACTGCATCTTTCACTAAATCGTAGATTTT-CTGAGGGTCAT-ACTTGTTC--TG 945 Query 46608 CATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAAT 46667 || ||| || | | ||||| ||||| |||| || | ||||||||| | | ||| Sbjct 946 AATGTAATTAGTATATAACAAACAGGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAAT 1005 Query 46668 TAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 ||| || ||||| ||||| || || ||||||| ||||| ||||| | ||| ||||| | Sbjct 1006 TAACTCATTAGAGAATGTAAGACCCGGCATTAAACCACGTTTTTTCAACCAGAATATCGA 1065 Query 46728 CGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCC 46787 ||| || || || ||||| || ||||||||| | || ||||| | || | || Sbjct 1066 GCAGAATGAGCCTGAGAAGAAAATACCTTCTACAACGGCAAATGCTAACAGGCGGTCAAT 1125 Query 46788 GTAACTGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGG 46847 || | | | |||| |||||| | ||||||||| || |||||||||||||| || Sbjct 1126 A-AAGTTTC--CGTTATCAATCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGG 1182 Query 46848 CATTGTTTCTATAGCATTAAAGAGAAAGtttttt---tCATCACTATCTTTAACATATGT 46904 || ||||| ||||||| | | || | | ||| || ||||| | ||| | Sbjct 1183 AATATGGTCTATGGCATTAA---GCATTTTATCTCGCTCAACAGGGTCTTTGATATAAGA 1239 Query 46905 ATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTA 46964 ||| || | ||| || ||||||||||||||||||| || ||||| || || || Sbjct 1240 ATCAATCAGAAGCGAGTAAGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATA 1299 Query 46965 AAAACATCTTGCTTCAGTAATCTGTACCTCTGT-ACAAAATCGTTCAGACAAATTCTCAT 47023 |||||| ||||||| | || ||||| | | ||||| | | | ||| || |||| Sbjct 1300 GAAACATTTTGCTTCGGCAAATTGTACACGAGAGATAAAATTGA-CTGCCAAGTTTTCAT 1358 Query 47024 TCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCAT 47083 | || || |||||| |||||||||||| ||||||||||| |||||||| ||| Sbjct 1359 TAACGATACCATCAGAAGCAGCAAAAAACGCCAATACATGAGAAATAAAATGACGCTCAC 1418 Query 47084 CGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCC 47143 | |||| | | |||||| || | ||| ||||| |||| |||||| ||||||| Sbjct 1419 CATCGCTCAGGCTTTCCCAGTCTTTCAAATCCGGTGATAGGTCTATTTCTTCGGCTGTCC 1478 Query 47144 AGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCA 47184 ||||||| ||||| ||||||||| | | ||| |||||| Sbjct 1479 AGAATGAAGCCTCATGTTTTTTATAAAATTGCCAGATATCA 1519 >seq4369 Length=2652 Score = 185 bits (204), Expect = 1e-41 Identities = 399/592 (67%), Gaps = 5/592 (1%) Strand=Plus/Minus Query 46632 TGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCC 46691 ||||||||||||||| | |||||| || | | ||| ||||| ||||| || || | || Sbjct 2618 TGCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACC 2559 Query 46692 AGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATAT 46751 ||||||| ||||| ||||| | |||| | |||| ||||| || || |||||||| Sbjct 2558 TGGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATAT 2499 Query 46752 GCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCA 46811 || || || ||| ||| || | || | ||| | | | | || || | ||||| Sbjct 2498 CCCCTCCACCGCCATGAAGGCAATGAGACGCTCAGCAAATGTACCCTC-TTCT--ATCCA 2442 Query 46812 CCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 46871 | | | ||||| | || || ||| | || || || |||| || | ||| | Sbjct 2441 CTTCAGTGCCCATTTTGCTTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGAAATAA 2382 Query 46872 AAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGA 46931 | ||||| | ||| |||| ||||||||| || || ||| || | || | Sbjct 2381 CTTGGCCTTTTCTACCGCATCATTAATATATGTATCAATCAAGAGAGAGTAAGTCTCAGC 2322 Query 46932 ATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTAC 46991 ||| |||||||| || ||||||||||| || | ||| | ||| || | | ||| || Sbjct 2321 ATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCTGCAC 2262 Query 46992 CTCTGT-ACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAA 47050 |||| | | ||||| ||| | |||||||| ||||| ||||| ||| ||||| | Sbjct 2261 CTCTTTCATAAAATTCA-CAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCAAAGA 2203 Query 47051 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGA 47110 | ||||| | ||| ||| |||| | ||||||| | | || | ||||| || | Sbjct 2202 ACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCCGCAA 2143 Query 47111 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACA 47170 || | || | ||| | ||||||||| ||||| || ||||| || ||||||||||||| Sbjct 2142 AGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTATACA 2083 Query 47171 TATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 | |||||||||| || | ||| ||| | | ||||| | || ||||| Sbjct 2082 ACTGCCATATATCATCATGCTTGATGGGATATAGGACAAACCGATCCGGATT 2031 >seq732 Length=22061 Score = 161 bits (178), Expect = 1e-34 Identities = 416/623 (67%), Gaps = 23/623 (4%) Strand=Plus/Plus Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681 |||| | || ||||| || || | ||| ||||||| |||||| | ||||| || | Sbjct 8955 ACATGAGGCACGCAAAGTCCGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGA 9014 Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 | |||| |||||||| || || ||||| || |||||||| || | ||| || || | Sbjct 9015 AGCTGAGGCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCG 9074 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCAT 46801 | ||||| |||||||| || | || ||||| | || | ||| |||| | || | Sbjct 9075 AGAAGAAAATGCCTTCGACCGAGGCAAATGCCAGCAGCCGCTCCGCGTACGAAG-ATACT 9133 Query 46802 TATGAATC-CACCT-TTGAGC--CCAATCAGCCTTTTTCTTT---ACACAAGGCATTGTT 46854 | || || |||| |||||| ||||| || ||||||| ||||| || || || Sbjct 9134 TGTGGGTCGCACCACTTGAGCGCCCAATTGGC---TTTCTTTCGAACACACGGGATGGTC 9190 Query 46855 TCTATAGCATTAAAGAGAAAGtt----tttttCATCACTATCTTTAACATATGTATCTAT 46910 || || || | ||| || || | | || | ||||||| || || || || Sbjct 9191 TCAATCGCGCGCA---GAAGGTGATCCTTCTCCGTCGCC-TCTTTAATGTACGTGTCAAT 9246 Query 46911 TAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACA 46970 | || ||| | ||| || || ||||||||||| || ||||| || || ||||| || Sbjct 9247 GAGCAGCGAATAGACTTCCGAGTGGATGTTTTCAATCGCGATCTGGAAGCCATAAAAGCA 9306 Query 46971 TCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA--GACAAATTCTCATTCACT 47028 | ||||| | | || || || | | ||| ||||| | || |||||| ||||| Sbjct 9307 CCGAGCTTCCGGCACTTGCACTTCATTGCTAAA--GTTCATGGCCAGATTCTCGTTCACA 9364 Query 47029 ATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTA 47088 || |||||||| || ||||| || || | ||||| || ||||| | |||| | Sbjct 9365 ATGCCATCACTGGCTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCATTGTCC 9424 Query 47089 GTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAAT 47148 || || || |||||| |||| ||| | | |||| || ||||| |||||||| Sbjct 9425 GTGAGGTTCGCCCAGTCCTTGAGATCGTGCACCAAGTCTAGCTCCTCAGCAGTCCAGAAC 9484 Query 47149 GACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACA 47208 || || || || || || ||||| | ||| | || | | |||||||||||| | ||| Sbjct 9485 GAAGCTTCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCTTGGATCGGAAAGAGCACA 9544 Query 47209 AATCTATTTGGATTTTTTGCAAG 47231 || | || || || || |||| Sbjct 9545 AAGCGGTTGGGGTTCTTCACAAG 9567 >seq75 Length=61118 Score = 122 bits (134), Expect = 1e-22 Identities = 778/1239 (63%), Gaps = 12/1239 (1%) Strand=Plus/Plus Query 76014 CGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAG 76073 |||| || || || ||||| || |||||||| || || |||||| || ||||| | Sbjct 21100 CGTAGTAGATCGTCTCGAAGATGTTCTTATTCAGCTCCCGCGCTTGCTCGCTTTCAAACG 21159 Query 76074 GATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTAT 76133 || | | |||||||| ||||| || || ||||| || ||||| || | || | | Sbjct 21160 CGTAGTTCATGAGAATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGT 21219 Query 76134 GTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTAT 76193 | | | | ||||| | |||||||| || ||||| ||||| | || || | || | Sbjct 21220 GGCGCATGTTGGACGTGCGAGCTTCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGT 21279 Query 76194 TGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCAT 76253 | || || | || || | |||||| | || || ||| ||| || | Sbjct 21280 TCAGGTTACGCGTCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCGT 21339 Query 76254 CTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCAT 76313 || |||||| | || |||| || || | |||||| || || || |||| | Sbjct 21340 CTTCAACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCG 21399 Query 76314 TGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTT 76373 | | | || | || ||| | ||||| || ||| || ||||| || || | Sbjct 21400 ACGTGAACTCCATCACTTCACAGCACAAGTTACTGGACCGGATCGTGCCAAGGTTCTGCT 21459 Query 76374 GGTTGCTCTTTTTGTTACA-TGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATC 76432 |||| | ||| | | || || |||||||| || | ||| || ||| ||||||||| Sbjct 21460 GGTT-CGATTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATC 21518 Query 76433 TGTGATTCGATAATAGATTTCCAGACGACTCTAG-CTTTTATTATAGATTTGTATCGCTT 76491 || | || | || | ||| | | || | | || || | || | | | | Sbjct 21519 TGCGCATCCAAGATCGCAAACCACA-GCTGCTGGGCATTGATCGTC--TTCCTCGCCCGT 21575 Query 76492 CTCTCTT--TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549 | ||||| || || | | ||| || ||||| || || ||||| || | || Sbjct 21576 CCCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCCCAGTACTCGTACAGC 21635 Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 || ||| |||||| ||||| | ||| ||||| ||||| | | | ||||||||||| Sbjct 21636 CCTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATG 21695 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 || ||||| |||| ||| | |||| || | || || | | | | |||||| || Sbjct 21696 AATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCCA 21755 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 ||| || | ||| || ||||| | | || | ||||| ||||| | || ||| Sbjct 21756 TGATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATC 21815 Query 76730 GCCATAACACCCGGT-CGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATA 76788 | || | | || | ||||| || || ||||| | |||| || |||| |||| | Sbjct 21816 G-CAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAA 21874 Query 76789 AACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCC 76848 || | | ||| || ||||| ||||| || | ||||| || || ||| || || Sbjct 21875 CACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGAATGTAGCTATT 21934 Query 76849 ACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGC 76908 || || ||||| ||| | ||| || ||||||||| ||| || || || Sbjct 21935 CGTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGC 21994 Query 76909 ACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGAAGAA 76967 ||| ||||||| || |||||||| || || || |||||| |||| | || || || Sbjct 21995 ACATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAA-AA 22053 Query 76968 AACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAG 77027 | || ||||| ||| | || || || |||||||||| || || | ||||| | Sbjct 22054 AGCACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGG 22113 Query 77028 TGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGAT 77087 | || | || | || | || | |||||||| | | || || ||| || || Sbjct 22114 TAAAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTAT 22173 Query 77088 GAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTA 77147 | || || | ||||| || | | ||| || || || ||||| || ||| || | Sbjct 22174 GGATGCCAATCGCGACTCGTAAAATCATCTGTTGCGGCCGTTCGACGACTTTACCGTTGA 22233 Query 77148 TTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 77207 ||||| || | ||| | |||||||| |||||||||| ||| || || | Sbjct 22234 CCCGAAACAAATAACCTCGTTCGAGGGTTTTAAACCCAAAATAGTCATATTCGAAATCCC 22293 Query 77208 TTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATT 77246 |||| || || | ||||| | |||||||| || Sbjct 22294 GGTCGTGGATGATCGCGGAATTCAAGAGGTCCTTATGTT 22332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712826693435520