Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq7203 329 5e-85
seq4369 185 1e-41
seq732 161 1e-34
seq75 122 1e-22
>seq7203
Length=1522
Score = 329 bits (364), Expect = 5e-85
Identities = 608/881 (69%), Gaps = 22/881 (2%)
Strand=Plus/Plus
Query 46315 TCTTCTTGTGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTA 46374
|||| || |||||||| ||| |||||||||||||||||||||||| ||||| |||||
Sbjct 650 TCTTTCTGAGACATAACACCCGCTTTTTGGTATTCACCTACACGTTTTTCGAAGAAATTG 709
Query 46375 GTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtt 46434
|||||||||| || || || | ||||| ||||| || ||||| || |||||||||||
Sbjct 710 GTTTTGCCTTGTAACGAAATCATATCCATGAAATCGAAAGGATTGGTCGCATTATAAATT 769
Query 46435 tttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATC 46494
|| |||| ||||||| | | || ||| || || || || || || |||
Sbjct 770 TTATTAACTCCTAATGATTCCAAAAGGTGATCGGCCACAAACTCAATGTATTGGCACATT 829
Query 46495 ATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCA 46554
| ||| |||||| || || | || ||||| || || || | || |||| |||
Sbjct 830 AGTTCGGCATTCATGCCAATCAACGAAACAGGTAGCGCATCAGTTACGAATTCTTTTTCG 889
Query 46555 ATAGTGACAGCATC-----CGATATTATCGATGTTACTGTT--TCCTCACTTGGTGGATG 46607
|| || ||||| | | || | ||| || ||| || | ||||| | ||
Sbjct 890 ATTTCTACTGCATCTTTCACTAAATCGTAGATTTT-CTGAGGGTCAT-ACTTGTTC--TG 945
Query 46608 CATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAAT 46667
|| ||| || | | ||||| ||||| |||| || | ||||||||| | | |||
Sbjct 946 AATGTAATTAGTATATAACAAACAGGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAAT 1005
Query 46668 TAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727
||| || ||||| ||||| || || ||||||| ||||| ||||| | ||| ||||| |
Sbjct 1006 TAACTCATTAGAGAATGTAAGACCCGGCATTAAACCACGTTTTTTCAACCAGAATATCGA 1065
Query 46728 CGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCC 46787
||| || || || ||||| || ||||||||| | || ||||| | || | ||
Sbjct 1066 GCAGAATGAGCCTGAGAAGAAAATACCTTCTACAACGGCAAATGCTAACAGGCGGTCAAT 1125
Query 46788 GTAACTGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGG 46847
|| | | | |||| |||||| | ||||||||| || |||||||||||||| ||
Sbjct 1126 A-AAGTTTC--CGTTATCAATCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGG 1182
Query 46848 CATTGTTTCTATAGCATTAAAGAGAAAGtttttt---tCATCACTATCTTTAACATATGT 46904
|| ||||| ||||||| | | || | | ||| || ||||| | ||| |
Sbjct 1183 AATATGGTCTATGGCATTAA---GCATTTTATCTCGCTCAACAGGGTCTTTGATATAAGA 1239
Query 46905 ATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTA 46964
||| || | ||| || ||||||||||||||||||| || ||||| || || ||
Sbjct 1240 ATCAATCAGAAGCGAGTAAGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATA 1299
Query 46965 AAAACATCTTGCTTCAGTAATCTGTACCTCTGT-ACAAAATCGTTCAGACAAATTCTCAT 47023
|||||| ||||||| | || ||||| | | ||||| | | | ||| || ||||
Sbjct 1300 GAAACATTTTGCTTCGGCAAATTGTACACGAGAGATAAAATTGA-CTGCCAAGTTTTCAT 1358
Query 47024 TCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCAT 47083
| || || |||||| |||||||||||| ||||||||||| |||||||| |||
Sbjct 1359 TAACGATACCATCAGAAGCAGCAAAAAACGCCAATACATGAGAAATAAAATGACGCTCAC 1418
Query 47084 CGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCC 47143
| |||| | | |||||| || | ||| ||||| |||| |||||| |||||||
Sbjct 1419 CATCGCTCAGGCTTTCCCAGTCTTTCAAATCCGGTGATAGGTCTATTTCTTCGGCTGTCC 1478
Query 47144 AGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCA 47184
||||||| ||||| ||||||||| | | ||| ||||||
Sbjct 1479 AGAATGAAGCCTCATGTTTTTTATAAAATTGCCAGATATCA 1519
>seq4369
Length=2652
Score = 185 bits (204), Expect = 1e-41
Identities = 399/592 (67%), Gaps = 5/592 (1%)
Strand=Plus/Minus
Query 46632 TGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCC 46691
||||||||||||||| | |||||| || | | ||| ||||| ||||| || || | ||
Sbjct 2618 TGCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACC 2559
Query 46692 AGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATAT 46751
||||||| ||||| ||||| | |||| | |||| ||||| || || ||||||||
Sbjct 2558 TGGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATAT 2499
Query 46752 GCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCA 46811
|| || || ||| ||| || | || | ||| | | | | || || | |||||
Sbjct 2498 CCCCTCCACCGCCATGAAGGCAATGAGACGCTCAGCAAATGTACCCTC-TTCT--ATCCA 2442
Query 46812 CCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 46871
| | | ||||| | || || ||| | || || || |||| || | ||| |
Sbjct 2441 CTTCAGTGCCCATTTTGCTTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGAAATAA 2382
Query 46872 AAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGA 46931
| ||||| | ||| |||| ||||||||| || || ||| || | || |
Sbjct 2381 CTTGGCCTTTTCTACCGCATCATTAATATATGTATCAATCAAGAGAGAGTAAGTCTCAGC 2322
Query 46932 ATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTAC 46991
||| |||||||| || ||||||||||| || | ||| | ||| || | | ||| ||
Sbjct 2321 ATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCTGCAC 2262
Query 46992 CTCTGT-ACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAA 47050
|||| | | ||||| ||| | |||||||| ||||| ||||| ||| ||||| |
Sbjct 2261 CTCTTTCATAAAATTCA-CAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCAAAGA 2203
Query 47051 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGA 47110
| ||||| | ||| ||| |||| | ||||||| | | || | ||||| || |
Sbjct 2202 ACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCCGCAA 2143
Query 47111 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACA 47170
|| | || | ||| | ||||||||| ||||| || ||||| || |||||||||||||
Sbjct 2142 AGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTATACA 2083
Query 47171 TATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222
| |||||||||| || | ||| ||| | | ||||| | || |||||
Sbjct 2082 ACTGCCATATATCATCATGCTTGATGGGATATAGGACAAACCGATCCGGATT 2031
>seq732
Length=22061
Score = 161 bits (178), Expect = 1e-34
Identities = 416/623 (67%), Gaps = 23/623 (4%)
Strand=Plus/Plus
Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681
|||| | || ||||| || || | ||| ||||||| |||||| | ||||| || |
Sbjct 8955 ACATGAGGCACGCAAAGTCCGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGA 9014
Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741
| |||| |||||||| || || ||||| || |||||||| || | ||| || || |
Sbjct 9015 AGCTGAGGCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCG 9074
Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCAT 46801
| ||||| |||||||| || | || ||||| | || | ||| |||| | || |
Sbjct 9075 AGAAGAAAATGCCTTCGACCGAGGCAAATGCCAGCAGCCGCTCCGCGTACGAAG-ATACT 9133
Query 46802 TATGAATC-CACCT-TTGAGC--CCAATCAGCCTTTTTCTTT---ACACAAGGCATTGTT 46854
| || || |||| |||||| ||||| || ||||||| ||||| || || ||
Sbjct 9134 TGTGGGTCGCACCACTTGAGCGCCCAATTGGC---TTTCTTTCGAACACACGGGATGGTC 9190
Query 46855 TCTATAGCATTAAAGAGAAAGtt----tttttCATCACTATCTTTAACATATGTATCTAT 46910
|| || || | ||| || || | | || | ||||||| || || || ||
Sbjct 9191 TCAATCGCGCGCA---GAAGGTGATCCTTCTCCGTCGCC-TCTTTAATGTACGTGTCAAT 9246
Query 46911 TAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACA 46970
| || ||| | ||| || || ||||||||||| || ||||| || || ||||| ||
Sbjct 9247 GAGCAGCGAATAGACTTCCGAGTGGATGTTTTCAATCGCGATCTGGAAGCCATAAAAGCA 9306
Query 46971 TCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA--GACAAATTCTCATTCACT 47028
| ||||| | | || || || | | ||| ||||| | || |||||| |||||
Sbjct 9307 CCGAGCTTCCGGCACTTGCACTTCATTGCTAAA--GTTCATGGCCAGATTCTCGTTCACA 9364
Query 47029 ATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTA 47088
|| |||||||| || ||||| || || | ||||| || ||||| | |||| |
Sbjct 9365 ATGCCATCACTGGCTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCATTGTCC 9424
Query 47089 GTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAAT 47148
|| || || |||||| |||| ||| | | |||| || ||||| ||||||||
Sbjct 9425 GTGAGGTTCGCCCAGTCCTTGAGATCGTGCACCAAGTCTAGCTCCTCAGCAGTCCAGAAC 9484
Query 47149 GACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACA 47208
|| || || || || || ||||| | ||| | || | | |||||||||||| | |||
Sbjct 9485 GAAGCTTCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCTTGGATCGGAAAGAGCACA 9544
Query 47209 AATCTATTTGGATTTTTTGCAAG 47231
|| | || || || || ||||
Sbjct 9545 AAGCGGTTGGGGTTCTTCACAAG 9567
>seq75
Length=61118
Score = 122 bits (134), Expect = 1e-22
Identities = 778/1239 (63%), Gaps = 12/1239 (1%)
Strand=Plus/Plus
Query 76014 CGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAG 76073
|||| || || || ||||| || |||||||| || || |||||| || ||||| |
Sbjct 21100 CGTAGTAGATCGTCTCGAAGATGTTCTTATTCAGCTCCCGCGCTTGCTCGCTTTCAAACG 21159
Query 76074 GATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTAT 76133
|| | | |||||||| ||||| || || ||||| || ||||| || | || | |
Sbjct 21160 CGTAGTTCATGAGAATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGT 21219
Query 76134 GTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTAT 76193
| | | | ||||| | |||||||| || ||||| ||||| | || || | || |
Sbjct 21220 GGCGCATGTTGGACGTGCGAGCTTCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGT 21279
Query 76194 TGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCAT 76253
| || || | || || | |||||| | || || ||| ||| || |
Sbjct 21280 TCAGGTTACGCGTCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCGT 21339
Query 76254 CTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCAT 76313
|| |||||| | || |||| || || | |||||| || || || |||| |
Sbjct 21340 CTTCAACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCG 21399
Query 76314 TGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTT 76373
| | | || | || ||| | ||||| || ||| || ||||| || || |
Sbjct 21400 ACGTGAACTCCATCACTTCACAGCACAAGTTACTGGACCGGATCGTGCCAAGGTTCTGCT 21459
Query 76374 GGTTGCTCTTTTTGTTACA-TGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATC 76432
|||| | ||| | | || || |||||||| || | ||| || ||| |||||||||
Sbjct 21460 GGTT-CGATTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATC 21518
Query 76433 TGTGATTCGATAATAGATTTCCAGACGACTCTAG-CTTTTATTATAGATTTGTATCGCTT 76491
|| | || | || | ||| | | || | | || || | || | | | |
Sbjct 21519 TGCGCATCCAAGATCGCAAACCACA-GCTGCTGGGCATTGATCGTC--TTCCTCGCCCGT 21575
Query 76492 CTCTCTT--TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549
| ||||| || || | | ||| || ||||| || || ||||| || | ||
Sbjct 21576 CCCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCCCAGTACTCGTACAGC 21635
Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609
|| ||| |||||| ||||| | ||| ||||| ||||| | | | |||||||||||
Sbjct 21636 CCTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATG 21695
Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669
|| ||||| |||| ||| | |||| || | || || | | | | |||||| ||
Sbjct 21696 AATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCCA 21755
Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729
||| || | ||| || ||||| | | || | ||||| ||||| | || |||
Sbjct 21756 TGATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATC 21815
Query 76730 GCCATAACACCCGGT-CGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATA 76788
| || | | || | ||||| || || ||||| | |||| || |||| |||| |
Sbjct 21816 G-CAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAA 21874
Query 76789 AACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCC 76848
|| | | ||| || ||||| ||||| || | ||||| || || ||| || ||
Sbjct 21875 CACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGAATGTAGCTATT 21934
Query 76849 ACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGC 76908
|| || ||||| ||| | ||| || ||||||||| ||| || || ||
Sbjct 21935 CGTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGC 21994
Query 76909 ACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGAAGAA 76967
||| ||||||| || |||||||| || || || |||||| |||| | || || ||
Sbjct 21995 ACATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAA-AA 22053
Query 76968 AACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAG 77027
| || ||||| ||| | || || || |||||||||| || || | ||||| |
Sbjct 22054 AGCACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGG 22113
Query 77028 TGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGAT 77087
| || | || | || | || | |||||||| | | || || ||| || ||
Sbjct 22114 TAAAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTAT 22173
Query 77088 GAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTA 77147
| || || | ||||| || | | ||| || || || ||||| || ||| || |
Sbjct 22174 GGATGCCAATCGCGACTCGTAAAATCATCTGTTGCGGCCGTTCGACGACTTTACCGTTGA 22233
Query 77148 TTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 77207
||||| || | ||| | |||||||| |||||||||| ||| || || |
Sbjct 22234 CCCGAAACAAATAACCTCGTTCGAGGGTTTTAAACCCAAAATAGTCATATTCGAAATCCC 22293
Query 77208 TTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATT 77246
|||| || || | ||||| | |||||||| ||
Sbjct 22294 GGTCGTGGATGATCGCGGAATTCAAGAGGTCCTTATGTT 22332
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712826693435520
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