Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq8929 109 8e-19 >seq8929 Length=1248 Score = 109 bits (120), Expect = 8e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 99564 CAAATGCGTTTTAATTTGGCTGAAGGTTTTCCTCTGGTCACTACTAAGC-GCTGTCACCT 99622 || ||||| || || | ||| || ||||| |||||||| || ||| |||| || || Sbjct 906 CAGATGCGCTTCGATCTCACTGCCGGCTTTCCGCTGGTCACCACCAAGAAGCTG-CATCT 964 Query 99623 CCGTTCTATTATTCATGAACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCT 99682 || || || || || || || || ||||| ||| | || |||||||| | | ||| || Sbjct 965 GCGCTCGATCATCCACGAGCTGCTGTGGTTTCTGCAGGGCGATACCAACATCGGGTATCT 1024 Query 99683 GAAAGATAACGGCGTCACTATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACC 99742 |||||| ||| || ||||||| | || |||| |||| || || ||| | || || Sbjct 1025 GAAAGACAACCAGGTGCGTATCTGGGACGAATGGGCCGACGACAATGGCGACCTTGGCCC 1084 Query 99743 GGTATACGGAAAGCAGTGGCGGTCTTGGCCCG 99774 ||| ||||| |||||||||||| |||| ||| Sbjct 1085 GGTGTACGGCAAGCAGTGGCGGCGTTGGACCG 1116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 734164269374160