Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_031048.1
Length=41918
Score E
Sequences producing significant alignments: (Bits) Value
seq6103 143 7e-30
>seq6103
Length=1793
Score = 143 bits (158), Expect = 7e-30
Identities = 188/257 (73%), Gaps = 10/257 (4%)
Strand=Plus/Plus
Query 26926 GATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCATTTACGGGTTCGCAGACC 26985
||||||||||||||| || ||||| | | || ||| || |||||| ||||||
Sbjct 332 GATTTCAGTGGTGTAACGGGTCACGCCATCTTTTTC---CCACTTGCGGGTTTGCAGACG 388
Query 26986 GCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCGCCAGCTT 27045
|||||||||| | ||| | |||||| |||||||||||||||||| || ||||| ||
Sbjct 389 GCCTTCAATGTAGACCGGACGGCCTTTTTTCAGGTATTCACCAGCGATCTCGGCCAGTTT 448
Query 27046 GCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTT--TTGGTTCGCCTGTGGCCTTA 27103
|| | || |||| ||||||||| || | || | ||| ||||| | |||
Sbjct 449 GCGATAAATCACAATATTGTGCCATTCGGTTTTTTCCTGCTTG--ACGCCT---GACTTG 503
Query 27104 TCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCAACTGCGCCACCTGACGGCATG 27163
|||||||| ||||| || || ||||| |||| |||||||| || |||| ||||||
Sbjct 504 TCTTTCCAGTTTTCAGTCGTCGCAATACTGAAGTTGGCAACCGCTTCACCATTCGGCATA 563
Query 27164 TAGCGCACTTCTGGATC 27180
||||||||||||| ||
Sbjct 564 AAGCGCACTTCTGGGTC 580
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 133996765856160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |