Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq6103 143 7e-30 >seq6103 Length=1793 Score = 143 bits (158), Expect = 7e-30 Identities = 188/257 (73%), Gaps = 10/257 (4%) Strand=Plus/Plus Query 26926 GATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCATTTACGGGTTCGCAGACC 26985 ||||||||||||||| || ||||| | | || ||| || |||||| |||||| Sbjct 332 GATTTCAGTGGTGTAACGGGTCACGCCATCTTTTTC---CCACTTGCGGGTTTGCAGACG 388 Query 26986 GCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCGCCAGCTT 27045 |||||||||| | ||| | |||||| |||||||||||||||||| || ||||| || Sbjct 389 GCCTTCAATGTAGACCGGACGGCCTTTTTTCAGGTATTCACCAGCGATCTCGGCCAGTTT 448 Query 27046 GCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTT--TTGGTTCGCCTGTGGCCTTA 27103 || | || |||| ||||||||| || | || | ||| ||||| | ||| Sbjct 449 GCGATAAATCACAATATTGTGCCATTCGGTTTTTTCCTGCTTG--ACGCCT---GACTTG 503 Query 27104 TCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCAACTGCGCCACCTGACGGCATG 27163 |||||||| ||||| || || ||||| |||| |||||||| || |||| |||||| Sbjct 504 TCTTTCCAGTTTTCAGTCGTCGCAATACTGAAGTTGGCAACCGCTTCACCATTCGGCATA 563 Query 27164 TAGCGCACTTCTGGATC 27180 ||||||||||||| || Sbjct 564 AAGCGCACTTCTGGGTC 580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133996765856160