Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq11831 104 9e-18 >seq11831 Length=1328 Score = 104 bits (114), Expect = 9e-18 Identities = 225/331 (68%), Gaps = 8/331 (2%) Strand=Plus/Plus Query 31076 GCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACATGTCCGCCAGG 31135 |||||||| | || | | ||||||||| || | |||||| || || | ||| ||| | Sbjct 746 GCGATCTGCGCGGTCATCTTTTCCTGCACCTGGAAGCGGCGCGCGTAGCTTTCCACCACG 805 Query 31136 CGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGATCGTG-ACCGT 31194 |||| ||||||||| | ||| || | ||| | || | ||||| || |||| ||| | Sbjct 806 CGGGCCAGCTTGCTGATGCCAACCACCTTGCCGCTGGGCAGGTAGCCGA-CGTGCACCTT 864 Query 31195 GCCGAAGATCGGCGCGAGGTGATGCTCGCAATGTGAGTAGATGGGGATGTCGCGCACCGT 31254 ||||| ||||||||| | ||| ||||||||||| | | || || ||||||| Sbjct 865 GCCGATGATCGGCGCCATGTGGTGCTCGCAATGGCTTTCGTAGGAAATATCGCGCA---G 921 Query 31255 CACCATCTGGTCATGCTTCTCCGCACCGTCTTCGAA--CACCTT-CAGGATGGCCTTCGG 31311 ||| ||| | || | | | || | || ||||| | || |||| | ||| Sbjct 922 CACGATCAGTTCGTCGTAGCCGGCGACTTCCTCGAAGGTGCGTTCCAGGTATTCGCGCGG 981 Query 31312 ATCCTTGCCGTAACCGCCGCACCAGTGGCGCCAGGCCTTAGCGACGCGATGCGGAGTCTC 31371 || | || ||| |||| | |||||| || |||| | ||||| || |||| || || Sbjct 982 TTCTTCGCGGTAGCCGCTGAACCAGTCGCCATAGGCTTCGGCGACACGGCGCGGGGTATC 1041 Query 31372 GAGCAGACCTTCCCGGGCAGGATCGTCCCCG 31402 | ||| ||||| ||||| ||||| || ||| Sbjct 1042 CAACAGGCCTTCGCGGGCCGGATCTTCGCCG 1072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187262719962496