Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_031078.1
Length=50082
Score E
Sequences producing significant alignments: (Bits) Value
seq7644 233 6e-57
seq3530 149 2e-31
>seq7644
Length=1437
Score = 233 bits (258), Expect = 6e-57
Identities = 308/422 (73%), Gaps = 14/422 (3%)
Strand=Plus/Minus
Query 40115 CCCGTACTTCTCGGTGACGTACCTGATCACGTCGCCCCG--TCGCCGGTCATCGAAGTCG 40172
||||||||| || | ||||| ||||||| | | || | | | | || |||||||
Sbjct 436 CCCGTACTTGTCCTTCACGTAGTCGATCACGCGGTCGCGGTTGGACTGGCA--GAAGTCG 379
Query 40173 ATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCG 40232
||||| | ||||||||| || |||||||||||||||||||| |||||||||||||| |||
Sbjct 378 ATGTCGAAGTCGGGCATCGAGACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGGCCG 319
Query 40233 TGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCC 40292
|| | | ||||| ||||| ||||| | | ||| || ||| || || || ||
Sbjct 318 TGGCGAAGCGGGTCGAGGTCGGTGATCTTCATGGCGTACGCCGCCATGGAGCCAGCGCCC 259
Query 40293 GAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCG 40352
||||| || ||||| ||||||| | |||||| ||||| |||||| |||||||||||||
Sbjct 258 GAGCCTCGGCCGGGGCCGACCCGGATGCCGTTGTCCTTCGCCCAGTTGATGAAGTCGGCG 199
Query 40353 ACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTACTGAAGC 40412
||||| ||||||||| |||||||||| ||| | ||| || || ||||||||| |
Sbjct 198 ACGACGAGGAAGTAGCCGGGGAACCCCATCTGCAGGATGATCCCGGTCTCGTACTCGGCC 139
Query 40413 TGCTTGCCATGCTCGTAGTCGG---TCCCGTTCGGGAACCGTCGAGCTGCACCACGG--T 40467
||||||| || | | ||||| | ||| ||||| | || | | || | ||| |
Sbjct 138 TGCTTGC---GCACCTTGTCGGGGATGCCGCTCGGGTAGCG--GTGATGGAGGCCGGCCT 84
Query 40468 GGACCTCGTCCTCGAACCACGTAACCTCGGTGTGACCCTCGGGCACGGGGAAGCGGGGCA 40527
|||||| | || ||| | | || || | || |||||||||||||| |||||||
Sbjct 83 CGACCTCCTTGATGAGCCAGCTGTCTTCCGTCTCGCCGTCGGGCACGGGGAAACGGGGCA 24
Query 40528 TG 40529
||
Sbjct 23 TG 22
Score = 111 bits (122), Expect = 5e-20
Identities = 129/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 39176 CGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCAT 39235
||| ||||| ||||| || || | || ||||| |||||| |||||||||||||||
Sbjct 1378 CGCGCCCTTGCGGAAGATCTCGCGGTGCTCGGCCATCTCCTCGGCCTTCTTCTTGCCCAT 1319
Query 39236 GGCTCGGCGGAGAAGGTCGGCCTGACCCAGGCTGTACCCAGCGAGGATCTGTGCCGCCTT 39295
||| ||||| || |||||||| ||||||||||| ||| | || | ||| || | ||
Sbjct 1318 GGCGCGGCGCAGCAGGTCGGCTCCGCCCAGGCTGTAGCCACCCAGCACCTGCGCGGTCTG 1259
Query 39296 CTGCACCTGCTCCTGGTAGATGACCAGCCCGTAGGTCGGCCCCAGGATCTCGGC 39349
| |||||| |||||||||| | | ||||||||| ||| ||||||||
Sbjct 1258 CATCACCTGTTCCTGGTAGACCATGATGCCGTAGGTCTCTGACAGCATCTCGGC 1205
>seq3530
Length=3544
Score = 149 bits (164), Expect = 2e-31
Identities = 172/232 (74%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 40166 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40225
|||||| || || | |||||||||||| || ||||| ||||| ||||| ||||| || |
Sbjct 898 GAAGTCAATATCGAAGTCGGGCATGGATACCCGCTCAGGGTTAAGGAAACGCTCAAACAG 839
Query 40226 GAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACC 40285
|| || || ||||||||||| || ||||| |||| ||| || ||||| |||||
Sbjct 838 CAGATTGTATTTGAGTGGGTCCAGGTCAGTAATGCCCAGGCTGTAAGCCACCAGTGAACC 779
Query 40286 GGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40345
||| | ||||| | || || || ||| |||||| || | || |||||| ||| ||
Sbjct 778 AGCACCGGAGCCCCTGCCCGGGCCTACCGGCACGCCATTATTTTTAGCCCAGTTGATAAA 719
Query 40346 GTCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCG 40397
|| || |||| |||||| ||| |||||||||| |||||| || ||| ||
Sbjct 718 ATCAGCTACGATCAGGAAATAGCCTGGGAACCCCATCTGGATAATGATGCCG 667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160117816392208
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |