Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq7644 233 6e-57 seq3530 149 2e-31 >seq7644 Length=1437 Score = 233 bits (258), Expect = 6e-57 Identities = 308/422 (73%), Gaps = 14/422 (3%) Strand=Plus/Minus Query 40115 CCCGTACTTCTCGGTGACGTACCTGATCACGTCGCCCCG--TCGCCGGTCATCGAAGTCG 40172 ||||||||| || | ||||| ||||||| | | || | | | | || ||||||| Sbjct 436 CCCGTACTTGTCCTTCACGTAGTCGATCACGCGGTCGCGGTTGGACTGGCA--GAAGTCG 379 Query 40173 ATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCG 40232 ||||| | ||||||||| || |||||||||||||||||||| |||||||||||||| ||| Sbjct 378 ATGTCGAAGTCGGGCATCGAGACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGGCCG 319 Query 40233 TGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCC 40292 || | | ||||| ||||| ||||| | | ||| || ||| || || || || Sbjct 318 TGGCGAAGCGGGTCGAGGTCGGTGATCTTCATGGCGTACGCCGCCATGGAGCCAGCGCCC 259 Query 40293 GAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCG 40352 ||||| || ||||| ||||||| | |||||| ||||| |||||| ||||||||||||| Sbjct 258 GAGCCTCGGCCGGGGCCGACCCGGATGCCGTTGTCCTTCGCCCAGTTGATGAAGTCGGCG 199 Query 40353 ACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTACTGAAGC 40412 ||||| ||||||||| |||||||||| ||| | ||| || || ||||||||| | Sbjct 198 ACGACGAGGAAGTAGCCGGGGAACCCCATCTGCAGGATGATCCCGGTCTCGTACTCGGCC 139 Query 40413 TGCTTGCCATGCTCGTAGTCGG---TCCCGTTCGGGAACCGTCGAGCTGCACCACGG--T 40467 ||||||| || | | ||||| | ||| ||||| | || | | || | ||| | Sbjct 138 TGCTTGC---GCACCTTGTCGGGGATGCCGCTCGGGTAGCG--GTGATGGAGGCCGGCCT 84 Query 40468 GGACCTCGTCCTCGAACCACGTAACCTCGGTGTGACCCTCGGGCACGGGGAAGCGGGGCA 40527 |||||| | || ||| | | || || | || |||||||||||||| ||||||| Sbjct 83 CGACCTCCTTGATGAGCCAGCTGTCTTCCGTCTCGCCGTCGGGCACGGGGAAACGGGGCA 24 Query 40528 TG 40529 || Sbjct 23 TG 22 Score = 111 bits (122), Expect = 5e-20 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 39176 CGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCAT 39235 ||| ||||| ||||| || || | || ||||| |||||| ||||||||||||||| Sbjct 1378 CGCGCCCTTGCGGAAGATCTCGCGGTGCTCGGCCATCTCCTCGGCCTTCTTCTTGCCCAT 1319 Query 39236 GGCTCGGCGGAGAAGGTCGGCCTGACCCAGGCTGTACCCAGCGAGGATCTGTGCCGCCTT 39295 ||| ||||| || |||||||| ||||||||||| ||| | || | ||| || | || Sbjct 1318 GGCGCGGCGCAGCAGGTCGGCTCCGCCCAGGCTGTAGCCACCCAGCACCTGCGCGGTCTG 1259 Query 39296 CTGCACCTGCTCCTGGTAGATGACCAGCCCGTAGGTCGGCCCCAGGATCTCGGC 39349 | |||||| |||||||||| | | ||||||||| ||| |||||||| Sbjct 1258 CATCACCTGTTCCTGGTAGACCATGATGCCGTAGGTCTCTGACAGCATCTCGGC 1205 >seq3530 Length=3544 Score = 149 bits (164), Expect = 2e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 40166 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40225 |||||| || || | |||||||||||| || ||||| ||||| ||||| ||||| || | Sbjct 898 GAAGTCAATATCGAAGTCGGGCATGGATACCCGCTCAGGGTTAAGGAAACGCTCAAACAG 839 Query 40226 GAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACC 40285 || || || ||||||||||| || ||||| |||| ||| || ||||| ||||| Sbjct 838 CAGATTGTATTTGAGTGGGTCCAGGTCAGTAATGCCCAGGCTGTAAGCCACCAGTGAACC 779 Query 40286 GGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40345 ||| | ||||| | || || || ||| |||||| || | || |||||| ||| || Sbjct 778 AGCACCGGAGCCCCTGCCCGGGCCTACCGGCACGCCATTATTTTTAGCCCAGTTGATAAA 719 Query 40346 GTCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCG 40397 || || |||| |||||| ||| |||||||||| |||||| || ||| || Sbjct 718 ATCAGCTACGATCAGGAAATAGCCTGGGAACCCCATCTGGATAATGATGCCG 667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160117816392208