Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_031107.1
Length=246291
Score E
Sequences producing significant alignments: (Bits) Value
seq8929 199 6e-46
seq3145 107 3e-18
seq3900 89.7 8e-13
>seq8929
Length=1248
Score = 199 bits (220), Expect = 6e-46
Identities = 228/304 (75%), Gaps = 2/304 (1%)
Strand=Plus/Plus
Query 201792 TGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCGACC 201851
|||| | |||||||| | |||| | || | ||| |||| | | ||| ||||||
Sbjct 811 TGAAGCCGTATCTGGATCTGCTGCAGCACGTGCTGGAACACGGTGCCGAAAAGTCCGACC 870
Query 201852 GTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAA-CTTACAAGAA 201910
| |||||||| ||||| | | || ||||| | ||||||||||| | || || |
Sbjct 871 GCACCGGTACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGCTTCGATCTCACT-GCC 929
Query 201911 GGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCTG 201970
|| |||||||||||||||||||| ||| | || || || || |||||||| |||||||||
Sbjct 930 GGCTTTCCGCTGGTCACCACCAAGAAGCTGCATCTGCGCTCGATCATCCACGAGCTGCTG 989
Query 201971 TGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTGG 202030
||||| || ||| || ||||||||| |||| ||||||||||| | || ||||||
Sbjct 990 TGGTTTCTGCAGGGCGATACCAACATCGGGTATCTGAAAGACAACCAGGTGCGTATCTGG 1049
Query 202031 GACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGTAGC 202090
||||||||||| || | || || ||| | |||||||||||||| ||||| ||||| |
Sbjct 1050 GACGAATGGGCCGACGACAATGGCGACCTTGGCCCGGTGTACGGCAAGCAGTGGCGGCGT 1109
Query 202091 TGGA 202094
||||
Sbjct 1110 TGGA 1113
>seq3145
Length=4143
Score = 107 bits (118), Expect = 3e-18
Identities = 175/252 (69%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 201842 AAAGCCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAAC 201901
||| ||||||||||||| || || || | || || || || ||||||||| ||||||
Sbjct 516 AAAACCGACCGTACCGGCACCGGGACGATTTCGGTGTTTGGCTACCAGATGCGATTTAAC 575
Query 201902 TTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCAT 201961
| |||||| || ||||| | || || ||||| || || | || || |||||
Sbjct 576 CTGGCAGAAGGATTCCCGCTACTGACGACTAAAAAAGTCCATTTGAAATCCATTATCCAC 635
Query 201962 GAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTC 202021
||| || | ||||| | | || |||||| || ||||| ||||| ||| |||
Sbjct 636 GAGTTGTTATGGTTTTTAAAAGGCAGCACCAATATTGCCTATTTAAAAGAAAACGGCGTG 695
Query 202022 ACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAA 202081
| |||||||| || ||||| ||| | ||| || | |||||||| || || | ||
Sbjct 696 AAAATCTGGGATGAGTGGGCAGATGCCGAAGGTAACCTGGGCCCGGTATATGGCTACCAG 755
Query 202082 TGGCGTAGCTGG 202093
||||||| ||||
Sbjct 756 TGGCGTAACTGG 767
>seq3900
Length=3081
Score = 89.7 bits (98), Expect = 8e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 4032 CGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCTAC 4091
||||||||||||||||||||| | ||| ||||||||| | ||||||||||||||||||||
Sbjct 2304 CGTAGCTCAGTTGGTTAGAGCACACGCTTGATAAGCGTGGGGTCGGTAGTTCAAGTCTAC 2363
Query 4092 TCGAGACAACCA 4103
|| | | ||||
Sbjct 2364 CCGGGCCCACCA 2375
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 787884152416560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |