Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq8929 199 6e-46 seq3145 107 3e-18 seq3900 89.7 8e-13 >seq8929 Length=1248 Score = 199 bits (220), Expect = 6e-46 Identities = 228/304 (75%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 201792 TGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCGACC 201851 |||| | |||||||| | |||| | || | ||| |||| | | ||| |||||| Sbjct 811 TGAAGCCGTATCTGGATCTGCTGCAGCACGTGCTGGAACACGGTGCCGAAAAGTCCGACC 870 Query 201852 GTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAA-CTTACAAGAA 201910 | |||||||| ||||| | | || ||||| | ||||||||||| | || || | Sbjct 871 GCACCGGTACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGCTTCGATCTCACT-GCC 929 Query 201911 GGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCTG 201970 || |||||||||||||||||||| ||| | || || || || |||||||| ||||||||| Sbjct 930 GGCTTTCCGCTGGTCACCACCAAGAAGCTGCATCTGCGCTCGATCATCCACGAGCTGCTG 989 Query 201971 TGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTGG 202030 ||||| || ||| || ||||||||| |||| ||||||||||| | || |||||| Sbjct 990 TGGTTTCTGCAGGGCGATACCAACATCGGGTATCTGAAAGACAACCAGGTGCGTATCTGG 1049 Query 202031 GACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGTAGC 202090 ||||||||||| || | || || ||| | |||||||||||||| ||||| ||||| | Sbjct 1050 GACGAATGGGCCGACGACAATGGCGACCTTGGCCCGGTGTACGGCAAGCAGTGGCGGCGT 1109 Query 202091 TGGA 202094 |||| Sbjct 1110 TGGA 1113 >seq3145 Length=4143 Score = 107 bits (118), Expect = 3e-18 Identities = 175/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 201842 AAAGCCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAAC 201901 ||| ||||||||||||| || || || | || || || || ||||||||| |||||| Sbjct 516 AAAACCGACCGTACCGGCACCGGGACGATTTCGGTGTTTGGCTACCAGATGCGATTTAAC 575 Query 201902 TTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCAT 201961 | |||||| || ||||| | || || ||||| || || | || || ||||| Sbjct 576 CTGGCAGAAGGATTCCCGCTACTGACGACTAAAAAAGTCCATTTGAAATCCATTATCCAC 635 Query 201962 GAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTC 202021 ||| || | ||||| | | || |||||| || ||||| ||||| ||| ||| Sbjct 636 GAGTTGTTATGGTTTTTAAAAGGCAGCACCAATATTGCCTATTTAAAAGAAAACGGCGTG 695 Query 202022 ACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAA 202081 | |||||||| || ||||| ||| | ||| || | |||||||| || || | || Sbjct 696 AAAATCTGGGATGAGTGGGCAGATGCCGAAGGTAACCTGGGCCCGGTATATGGCTACCAG 755 Query 202082 TGGCGTAGCTGG 202093 ||||||| |||| Sbjct 756 TGGCGTAACTGG 767 >seq3900 Length=3081 Score = 89.7 bits (98), Expect = 8e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 4032 CGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCTAC 4091 ||||||||||||||||||||| | ||| ||||||||| | |||||||||||||||||||| Sbjct 2304 CGTAGCTCAGTTGGTTAGAGCACACGCTTGATAAGCGTGGGGTCGGTAGTTCAAGTCTAC 2363 Query 4092 TCGAGACAACCA 4103 || | | |||| Sbjct 2364 CCGGGCCCACCA 2375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787884152416560