Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq8929 203 5e-47 seq3145 149 1e-30 >seq8929 Length=1248 Score = 203 bits (224), Expect = 5e-47 Identities = 222/295 (75%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 196015 TGAAACAGTATTTGGAATTGATGCACACCGTGTTGAACGAAGGTCACGAGAAAGCTGACC 196074 |||| | |||| |||| || |||| |||| || | | ||| ||| || | |||| Sbjct 811 TGAAGCCGTATCTGGATCTGCTGCAGCACGTGCTGGAACACGGTGCCGAAAAGTCCGACC 870 Query 196075 GTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGCAAAG 196134 | ||||| || ||||| | | ||||| | |||||||| || || || | Sbjct 871 GCACCGGTACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGCTTCGATCTCACTGCCG 930 Query 196135 GGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGTTGT 196194 | || ||||||||||||||||| ||| |||| ||||| || ||||||||||| ||| ||| Sbjct 931 GCTTTCCGCTGGTCACCACCAAGAAGCTGCATCTGCGCTCGATCATCCACGAGCTGCTGT 990 Query 196195 GGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTGGG 196254 |||| ||| | ||||| ||||||||| |||||||||||||||| | || ||||||||| Sbjct 991 GGTTTCTGCAGGGCGATACCAACATCGGGTATCTGAAAGACAACCAGGTGCGTATCTGGG 1050 Query 196255 ATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 | || ||||| || || ||||||| |||||||| || ||||| ||||||||||| Sbjct 1051 ACGAATGGGCCGACGACAATGGCGACCTTGGCCCGGTGTACGGCAAGCAGTGGCG 1105 >seq3145 Length=4143 Score = 149 bits (164), Expect = 1e-30 Identities = 188/256 (73%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 196056 GGTCACGAGAAAGCTGACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATG 196115 || ||| ||||| | |||||||||||||| || || || || | || || || |||||| Sbjct 507 GGGCACCAGAAAACCGACCGTACCGGCACCGGGACGATTTCGGTGTTTGGCTACCAGATG 566 Query 196116 CGTTTTGACCTGCGCA-AAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATC 196174 || ||| ||||| ||| |||| |||||||| | || || ||||| | || || ||| Sbjct 567 CGATTTAACCTG-GCAGAAGGATTCCCGCTACTGACGACTAAAAAAGTCCATTTGAAATC 625 Query 196175 TATCATCCACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGA 196234 || |||||||| |||| ||||| | || ||| |||||| || ||| | ||||| Sbjct 626 CATTATCCACGAGTTGTTATGGTTTTTAAAAGGCAGCACCAATATTGCCTATTTAAAAGA 685 Query 196235 CAACAACGTCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTA 196294 ||| ||| | |||||||||||||||||||||| || || | || ||||| || || Sbjct 686 AAACGGCGTGAAAATCTGGGATGAGTGGGCAGATGCCGAAGGTAACCTGGGCCCGGTATA 745 Query 196295 CGGTAAGCAGTGGCGT 196310 || | ||||||||| Sbjct 746 TGGCTACCAGTGGCGT 761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770190825839760