Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_031129.1
Length=103445
Score E
Sequences producing significant alignments: (Bits) Value
seq7802 114 9e-21
seq2406 98.7 7e-16
>seq7802
Length=1410
Score = 114 bits (126), Expect = 9e-21
Identities = 223/325 (69%), Gaps = 7/325 (2%)
Strand=Plus/Plus
Query 96764 CGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTA----TCCGGGTGATA 96819
|| ||||| ||||| || | |||||| | |||||| || || | ||| || ||
Sbjct 765 CGGTGCTTGCCGATGATGATCTCGGCCAGGCCCTT-ATCCGGCGAATTTTCCTTGTTGTA 823
Query 96820 AACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCTGATTC 96879
|||||||| || | || | ||||| ||| ||||||||||| ||||| || |||||
Sbjct 824 GTAATCGTCGCGGTAGATGAAGACGATCATGTCGGCGTCCTGCTCGATTGCGCCGGATTC 883
Query 96880 ACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCGATTAAGTTG 96939
|| || || | | ||||| || ||||| | ||| ||| ||||| || || || ||
Sbjct 884 GCGCAAGTCGGCCATCACCGGGCGCTTGTCGGTACGGGTTTCCAGCGAGCGGTTGAGCTG 943
Query 96940 TGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGAGAAAT 96999
|||| || | |||||| || | | |||||| |||| |||| || || || ||
Sbjct 944 CGACAGCGCAATCACCGGCACATTGAGTTCCTTGGCCAGGCCCTTGAGACCACGCGAGAT 1003
Query 97000 CTCGGCAATTTCCAGCGTTCGGTTATC-TTGCAGCTCCGGGACGCGCATAAGTTGCAGGT 97058
|| | |||||| || ||||| || || || |||| || ||| || |||||||
Sbjct 1004 TTCCGAAATTTCGGTCGCGCGGTTTTCACTGTTGC-CCGGCACCGACATCAGCTGCAGGT 1062
Query 97059 AGTCGATCATAATCATGCTCAAACC 97083
||||||| || | ||| | || |||
Sbjct 1063 AGTCGATGATGACCATTCGCAGACC 1087
>seq2406
Length=6247
Score = 98.7 bits (108), Expect = 7e-16
Identities = 140/191 (73%), Gaps = 12/191 (6%)
Strand=Plus/Minus
Query 58538 GGCCGAAACTTCCCGTCTTCCAGTCTGCGGCTCTGC--CGCCAGACGTAATCGCCGGTTA 58595
|||| |||||| || | ||| ||| ||| |||| ||||||| |||||||||||| |
Sbjct 222 GGCCTAAACTTGCCCGCG-CCAATCTT-GGCGCTGCTGCGCCAGAGGTAATCGCCGGTCA 165
Query 58596 GGTTGATGTGCTCCCAGCCCAGCGGCGACAGGAATTGCAGCAGCTCGCCGTCCACCGGCT 58655
|||||||||| ||||||||||||||||||||| | |||| |||| | || || | |
Sbjct 164 GGTTGATGTGTTCCCAGCCCAGCGGCGACAGGTACTGCAACAGCGTTTCATCGACGGCAT 105
Query 58656 TGCCG--GCCTCGACCAACCCCTGGGTGGCGCGTTCCAGGTACACCGTGTTCCACAGCAC 58713
||||| ||| || || | | || | || ||| | |||||||||||||||||
Sbjct 104 TGCCGTTGCCACG--CAGCGCATGCGCTGC----AACAGACAGACCGTGTTCCACAGCAC 51
Query 58714 GATAGCCGCCG 58724
| || ||||
Sbjct 50 AACGGCGGCCG 40
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 330850459168276
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |