Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq7802 114 9e-21 seq2406 98.7 7e-16 >seq7802 Length=1410 Score = 114 bits (126), Expect = 9e-21 Identities = 223/325 (69%), Gaps = 7/325 (2%) Strand=Plus/Plus Query 96764 CGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTA----TCCGGGTGATA 96819 || ||||| ||||| || | |||||| | |||||| || || | ||| || || Sbjct 765 CGGTGCTTGCCGATGATGATCTCGGCCAGGCCCTT-ATCCGGCGAATTTTCCTTGTTGTA 823 Query 96820 AACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCTGATTC 96879 |||||||| || | || | ||||| ||| ||||||||||| ||||| || ||||| Sbjct 824 GTAATCGTCGCGGTAGATGAAGACGATCATGTCGGCGTCCTGCTCGATTGCGCCGGATTC 883 Query 96880 ACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCGATTAAGTTG 96939 || || || | | ||||| || ||||| | ||| ||| ||||| || || || || Sbjct 884 GCGCAAGTCGGCCATCACCGGGCGCTTGTCGGTACGGGTTTCCAGCGAGCGGTTGAGCTG 943 Query 96940 TGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGAGAAAT 96999 |||| || | |||||| || | | |||||| |||| |||| || || || || Sbjct 944 CGACAGCGCAATCACCGGCACATTGAGTTCCTTGGCCAGGCCCTTGAGACCACGCGAGAT 1003 Query 97000 CTCGGCAATTTCCAGCGTTCGGTTATC-TTGCAGCTCCGGGACGCGCATAAGTTGCAGGT 97058 || | |||||| || ||||| || || || |||| || ||| || ||||||| Sbjct 1004 TTCCGAAATTTCGGTCGCGCGGTTTTCACTGTTGC-CCGGCACCGACATCAGCTGCAGGT 1062 Query 97059 AGTCGATCATAATCATGCTCAAACC 97083 ||||||| || | ||| | || ||| Sbjct 1063 AGTCGATGATGACCATTCGCAGACC 1087 >seq2406 Length=6247 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/191 (73%), Gaps = 12/191 (6%) Strand=Plus/Minus Query 58538 GGCCGAAACTTCCCGTCTTCCAGTCTGCGGCTCTGC--CGCCAGACGTAATCGCCGGTTA 58595 |||| |||||| || | ||| ||| ||| |||| ||||||| |||||||||||| | Sbjct 222 GGCCTAAACTTGCCCGCG-CCAATCTT-GGCGCTGCTGCGCCAGAGGTAATCGCCGGTCA 165 Query 58596 GGTTGATGTGCTCCCAGCCCAGCGGCGACAGGAATTGCAGCAGCTCGCCGTCCACCGGCT 58655 |||||||||| ||||||||||||||||||||| | |||| |||| | || || | | Sbjct 164 GGTTGATGTGTTCCCAGCCCAGCGGCGACAGGTACTGCAACAGCGTTTCATCGACGGCAT 105 Query 58656 TGCCG--GCCTCGACCAACCCCTGGGTGGCGCGTTCCAGGTACACCGTGTTCCACAGCAC 58713 ||||| ||| || || | | || | || ||| | ||||||||||||||||| Sbjct 104 TGCCGTTGCCACG--CAGCGCATGCGCTGC----AACAGACAGACCGTGTTCCACAGCAC 51 Query 58714 GATAGCCGCCG 58724 | || |||| Sbjct 50 AACGGCGGCCG 40 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330850459168276