Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq5297 102 1e-16 seq5177 82.4 9e-11 >seq5297 Length=2090 Score = 102 bits (112), Expect = 1e-16 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19747 ATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19806 ||||||| |||||||||||||||||||| ||||||||||| || ||||||||||||| Sbjct 1243 ATTCCTCAATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 1302 Query 19807 GCCCAGGTGGAGGAGC 19822 |||||||| ||||||| Sbjct 1303 GCCCAGGTTGAGGAGC 1318 >seq5177 Length=2144 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 157677 AACGTCTATATATTAGAGGGGATACGTTTCTACGTATCATTTGCATGTTCGTTTGCTTTT 157736 ||||| |||| | || | ||| || |||||||| || || || || || || ||| Sbjct 559 AACGTGAATATCCTGGAAGCGATCCGCTTCTACGTCAGCTTCGCCTGCTCATTCGCCTTT 618 Query 157737 GGCGAGAACAAACTGATGGAAGGCAACGCTAAGATTATTTCTCTCATTGCGAGAGATGAA 157796 | |||| ||| |||||||||||||||| ||||| || || |||||| | |||||| Sbjct 619 GCCGAGCGCAAGGTGATGGAAGGCAACGCCAAGATCATCCGCCTGATTGCGCGTGATGAA 678 Query 157797 TCTCAGCACATGACCATTACACAGAACATTCTTAA 157831 | | |||| ||||| || ||| |||| || || Sbjct 679 GCCCTGCACCTGACCGGCACCCAGCACATGCTCAA 713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621976420714320