Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq151 170 4e-37 seq1324 140 7e-28 seq4954 104 5e-17 seq91 100 6e-16 seq3759 93.3 9e-14 seq373 93.3 9e-14 seq11811 84.2 5e-11 seq1033 84.2 5e-11 seq13 84.2 5e-11 >seq151 Length=51439 Score = 170 bits (188), Expect = 4e-37 Identities = 178/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||||||||| ||||| || | ||| || || |||||||||||||| Sbjct 38274 CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 38333 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| || || || || || ||||||||||||| || || |||||| ||| Sbjct 38334 AGCGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGG 38393 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || || | || || | ||| || | || || Sbjct 38394 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACATTGTCAATCGAGTCAGACGGCTCCAC 38452 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| || ||||| ||||| ||||| |||||||| || Sbjct 38453 GTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCATCTT 38503 Score = 165 bits (182), Expect = 2e-35 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||||||||| ||||| || | ||| || || ||||||||||||||| Sbjct 38046 CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 38105 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| ||||| || || || || || ||||||||||||| || || |||||| ||| Sbjct 38106 AGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGG 38165 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || || | || || | ||| || | || || Sbjct 38166 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACATTGTCAATCGAGTCAGACGGCTCCAC 38224 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || |||||||| || ||||| ||||| ||||| |||||||| Sbjct 38225 GTCCAGCGTAATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38272 >seq1324 Length=13147 Score = 140 bits (154), Expect = 7e-28 Identities = 146/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||||||||||||||| | |||||||| || || || ||||| || |||||||||||| Sbjct 2106 TTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGATC 2165 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | ||| || |||||| ||||| || ||||| || || ||||| ||| || || | || Sbjct 2166 AGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGC-TTCACATTGTC 2224 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||| || | || || || || ||||||||||| || ||||| ||||| || || Sbjct 2225 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACAAA 2284 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 2285 GATCTGCAT 2293 >seq4954 Length=2267 Score = 104 bits (114), Expect = 5e-17 Identities = 386/596 (65%), Gaps = 22/596 (4%) Strand=Plus/Minus Query 301318 AAATTTATGTTCATCACCGGCGGCGT---TTCAAGTTCATTGGGGAAAGGCCTCGCTGCT 301374 |||| | | ||| | |||||||| || ||| ||| | || ||||| |||| || Sbjct 1395 AAATATGTATTCGTAACCGGCGGTGTAGTTTC---TTCTCTTGGAAAAGGTATCGCAGCG 1339 Query 301375 GCGAGTATCGCCAGTTTACTAGAGAGGCGATGC-TTAAAGATAGCGATGCTTAAAATGGA 301433 || ||| | | | | | || || ||| || |||||| | | ||||| || | || Sbjct 1338 GCTAGTCTGGGCGCTATTCTCGAATCGCGTGGCATTAAAGTGACC-ATGCTCAAGCTTGA 1280 Query 301434 CCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTCGT 301493 ||||||||||||||| || || || || ||| || || ||||| ||||| || || Sbjct 1279 CCCCTATATCAACGTTGACCCAGGCACCATGTCGCCATTCCAGCATGGCGAAGTCTTTGT 1220 Query 301494 GACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACG-TTTCACTTCAT 301552 || |||||||| || |||||||| || || || ||||| ||||| || ||| | || Sbjct 1219 CACCGATGATGGCGCGGAAACCGACCTCGACCTAGGGCATTACGAGCGCTTTATCAGCAG 1160 Query 301553 TAACCCTT--AAGCGTGAAAGTAATTTTACGACTGGCCAAGTTTATTTAAAAGTTATCGA 301610 || | ||||| | || || || || |||||| | ||| || || ||| | Sbjct 1159 CAAGATGTCCAAGCG---CAACAACTTCACCACAGGCCAAATCTATGAAACCGTGATCAA 1103 Query 301611 AAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCCCCACATCACCGA 301670 ||| || || ||| || || || || || || || || | || ||||| || || Sbjct 1102 AAAAGAGCGTCGCGGTGAATACCTGGGTAAAACCGTACAGGTGATCCCGCACATTACTGA 1043 Query 301671 TGAAATCAAAAGAAGAATTCACATTGCGGCTGAAAAATCAGATATACTTATTGGAGAAAT 301730 || |||||| ||| | | || ||| | ||| | || | ||| | Sbjct 1042 CGAGATCAAATCCCATATTAAACGCGGTGCCGAAGGCGCTGATGTCGCGATCGTCGAAGT 983 Query 301731 TGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGAAGCGATTCGTCAACTCTC 301790 ||| || || || || ||||| || || | || || | ||||||||||| || | Sbjct 982 TGGCGGCACTGTAGGTGATATTGAGTCCTTGCCGTTCCTGGAAGCGATTCGCCAGATGGG 923 Query 301791 TCATGACGAAGGAACGGCCAA----TGTTCTGTTCATTCATCTCGTGCTCTTACCCTATA 301846 ||| ||||| | | || |||| ||| |||| | | | | || |||| | Sbjct 922 GTTTGAAGAAGGCAAGAATAACGCCTGTTATGTGCATT--TGACCT--TATTGCCCTGGA 867 Query 301847 TAGCGACTGCTGGTGAGTTGAAATCAAAGCCAGCACAGCATTCGGTTAAAGAATTG 301902 | |||| || || ||||||||| | || ||| | ||||| ||||| ||||||||| Sbjct 866 TTCCGACCGCAGGCGAGTTGAAAACCAAACCAACGCAGCACTCGGTGAAAGAATTG 811 >seq91 Length=60761 Score = 100 bits (110), Expect = 6e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 316948 ATGAAGTCAACGATAGACGTGTTAGATTCGGATCCGTCGAGGTCATGCTCAACATATGCA 317007 ||||| ||||| | |||| | | ||| || | | |||| ||||| ||| | || Sbjct 12381 ATGAACTCAACCACAGACAGCTCCGCTTCCGAAGCCTGCAGGTTGTGCTCCACAAACACA 12440 Query 317008 GTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATC 317067 || ||||| || | || || || |||| |||||||||| ||| || | |||| Sbjct 12441 GTCTTCAGCTCGTCGCGGCTTGGAAATCCCTCCAGCTGACCGTTCGAAATGGCGCGCATC 12500 Query 317068 AGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGA 317127 || |||||||| ||| || ||||| ||||| ||||| || || | || ||| ||| Sbjct 12501 AGCGTCGACTTACCACACCCGTTGGGACCGCACAGACCGTAACGGTGACCACGCTTAAGA 12560 Query 317128 TTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCA 317187 | ||| | ||||||| | ||| ||||||| || || || ||||||||||| | | Sbjct 12561 CGGAGACGAGCATTGTTCAACAAGATCATACCACCGTAAGCAAGCGAGAACTCACAGTTA 12620 Query 317188 CACAGGTC 317195 || ||||| Sbjct 12621 CAGAGGTC 12628 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||||||||| || ||||||| ||||||||||| || | ||| || || Sbjct 11604 TCCTTGTCTTCACCAGACTGGAAACGCCACTGGATGTACTGGTTTGCAGTCTCATCGAGG 11663 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||| |||||||||||||| ||||| ||||||||||| | |||||| || ||| Sbjct 11664 TGCGACTCAATGTGGTGGAAAGCATGCTGAGCCACGTAAGCGAAACGCATGGAAGGGTGC 11723 Query 316282 TTCCA 316286 ||||| Sbjct 11724 TTCCA 11728 >seq3759 Length=3256 Score = 93.3 bits (102), Expect = 9e-14 Identities = 168/241 (70%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222 ||||| ||||| | || || | ||||| ||||| || || || ||| | ||| | Sbjct 124 ATCGTGACAGAGGCGGTAGCTATAGAAAAAGAGTTTATCTGTGAAGCTTTGCCTGTGAAT 183 Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || ||||| ||||| |||| | |||| ||||||||||| | || || ||| | || Sbjct 184 CTCATCGGAATGAACTCTGACTTGATGGCTCAATATATCGAGTATGTGGCGGAT--TTTT 241 Query 230283 TTCGT-GGCGCTAGGG--TACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATG 230339 | | | || | ||| ||| | || ||||||||| | |||| || || | |||||| Sbjct 242 GGCTTAGTCGGTTGGGACTACCA-AAGGTGTATAACACGCAGAATCCTTTTGACTTTATG 300 Query 230340 GAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAA 230399 | | ||||||||| ||||| || |||||||| || || ||||| | || |||||| Sbjct 301 CAAATGATTTCACTCTCCGGGAAGACAAACTTCTTTGAGAAACGTGTAGGAGACTATCAA 360 Query 230400 A 230400 | Sbjct 361 A 361 >seq373 Length=42858 Score = 93.3 bits (102), Expect = 9e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| ||||| ||||| || | ||| || || |||||||||||||| | Sbjct 34200 ACCGCCACGCAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 34259 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||||||||| || || || || ||||| | ||| || |||||| ||| Sbjct 34260 CAGAGTACGACCATCCTCTAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGCGG 34319 Query 282992 AATACC 282997 ||| || Sbjct 34320 AATTCC 34325 >seq11811 Length=1133 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||||||||| |||||||||||||| || |||| ||||||||||||| || Sbjct 104 TTAGTATAGTGGTTAGTATACCTGCCTGTCACGCGGGTGACCCGGGTTCAATTCCCGGA 162 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||||||||| |||||||||||||| || |||| ||||||||||||| || Sbjct 643 TTAGTATAGTGGTTAGTATACCTGCCTGTCACGCGGGTGACCCGGGTTCAATTCCCGGA 701 >seq1033 Length=33980 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||||||||| |||||||||||||| || |||| ||||||||||||| || Sbjct 33824 TTAGTATAGTGGTTAGTATACCTGCCTGTCACGCGGGTGACCCGGGTTCAATTCCCGGA 33882 >seq13 Length=90214 Score = 84.2 bits (92), Expect = 5e-11 Identities = 194/290 (67%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 273774 AGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCA 273833 |||| ||| || || |||| || || || ||||| || ||||||| || | |||| Sbjct 60557 AGTTGCGTAAAGATATACCGGGGGCTAGCTGCATCCTTACCTCCTTGCAACCGAGTACCA 60498 Query 273834 AACTGACCCTCGGG---CAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCC 273890 || || || || ||| ||| | | ||||||| || ||| |||| || ||| Sbjct 60497 AATTGGCCGGATGGATACAGCAGCGGG---AGGTTGTTGGAGCCAACGAAATCTTGGGCC 60441 Query 273891 ATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCG 273950 |||||||| || ||| || | || | || |||||||| || || ||||||| | Sbjct 60440 ATATTCACAATCGTCGAATGCAACGAAGCTTCACCGTGGTGGTAAGCTGTGTGTTCACTG 60381 Query 273951 ATATAACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGA---ATGCG 274007 || || | ||| || ||||| || ||||| |||| || ||||| | | ||| Sbjct 60380 CAGTAGCCTGCCAGCTGCGCCACCTTTACTTCGCTGGTCAGCTTGCGCTTCATACAAGCG 60321 Query 274008 GAATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGG 274057 || | ||| || |||||||| ||||| |||||| || || ||||| Sbjct 60320 AAA---AGCACTTTGCGCTGCGAAATCTTGAGCCCATCGACCACAGATGG 60274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046577110472244