Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq7203 203 3e-47 seq4369 147 2e-30 >seq7203 Length=1522 Score = 203 bits (224), Expect = 3e-47 Identities = 559/843 (66%), Gaps = 39/843 (5%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 |||||||||| |||||| ||||| || |||||| ||||||| ||||| || || || | Sbjct 661 CATAACACCCGCTTTTTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCTTG 720 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTA---CA 23321 ||| || || | ||||| ||||| || ||||| | | |||||| | ||| | Sbjct 721 TAACGAAATCATATCCATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACTCC 780 Query 23322 TGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATA 23381 | || ||||| ||||| ||| || ||||| ||||| ||||| ||||| | || Sbjct 781 TAATGATTCC---AAAAGGTGATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGC 837 Query 23382 GTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAAC 23441 || || || || | || || | ||||||| || |||| |||||| || || Sbjct 838 ATTCATGCCAATCAACGAAACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTAC 897 Query 23442 AGCATCTTTAATTATTT-GAACAATAACT-----TCTTCACTAGGTGGATATTTTAAATA 23495 |||||||| | || | | | | | || || | ||| | | || | ||| Sbjct 898 TGCATCTTTCACTAAATCGTAGATTTTCTGAGGGTCAT-ACTTGTTCTGAATGT--AATT 954 Query 23496 CTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATT 23555 || | || ||||| ||||| |||| |||| ||||||||| | | ||| || ||||| Sbjct 955 AGTATATAACAAACAGGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATT 1014 Query 23556 AGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCA-AATG 23614 ||| ||||| | || |||||||| || |||||||| | ||| ||||| | |||| |||| Sbjct 1015 AGAGAATGTAAGACCCGGCATTAAACCACGTTTTTTCAACCAGAATATCG-AGCAGAATG 1073 Query 23615 ATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTG 23674 | || || ||||||||||| || ||| | ||||| || | || || | ||| || Sbjct 1074 AGCCTGAGAAGAAAATACCTTCTACAACGGCAAATGCTAACAGGCGGTCAATAAAGTTTC 1133 Query 23675 CATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTG 23734 | |||| |||||| | ||||| || || ||||||||| ||| Sbjct 1134 CGTTAT------CAATCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGGAATAT 1187 Query 23735 TTTCAATTGCTTTTAAGAGAAAAGTTTTTTCT---TCATTA---TCTGTTATATATGTAT 23788 || || || || || |||| ||| ||| | ||| | ||||| | || Sbjct 1188 GGTCTATGGCATT------AAGCATTTTATCTCGCTCAACAGGGTCTTTGATATAAGAAT 1241 Query 23789 CAATTAGTAAACTA-TACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAA 23847 |||| || || | | || |||| |||||||| ||||| || |||||| || ||||| Sbjct 1242 CAATCAG-AAGCGAGTAAGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATAG 1300 Query 23848 AAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTA 23907 |||||| | ||||| | ||||| ||| | | ||| | || || ||||| ||| Sbjct 1301 AAACATTTTGCTTCGGCAAATTGTACACGAGAGATAAAATTGACTGCCAAGTTTTCATTA 1360 Query 23908 ACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 23967 || ||||||||| ||||||||| || || | |||| |||||||| | ||| || Sbjct 1361 ACGATACCATCAGAAGCAGCAAAAAACGCCAATACATGAGAAATAAAATGACGCTCACCA 1420 Query 23968 GTTGAT-AATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCA 24026 | | | | ||| ||| || || | ||| ||||| || | ||| || ||||||| Sbjct 1421 -TCGCTCAGGCTTTCCCAGTCTTTCAAATCCGGTGATAGGTCTATTTCTTCGGCTGTCCA 1479 Query 24027 AAA 24029 || Sbjct 1480 GAA 1482 >seq4369 Length=2652 Score = 147 bits (162), Expect = 2e-30 Identities = 393/597 (66%), Gaps = 24/597 (4%) Strand=Plus/Minus Query 23511 TGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCC 23570 ||||||||||||||||| |||||| || | | ||||||||||||||| || || || || Sbjct 2618 TGCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACC 2559 Query 23571 TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAAT 23630 ||||||||| || |||||||| | |||| | || | | || | || || ||||| || Sbjct 2558 TGGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATAT 2499 Query 23631 ACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAAT 23690 ||||| || ||| ||||| | ||||| | |||||| || || || Sbjct 2498 CCCCTCCACCGCCATGAAGGCAATGAGACGCTCAGCAAATG------TACCCTCTTCTAT 2445 Query 23691 CCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTA- 23749 ||| || || ||| || || ||| || | |||| || ||| | | || Sbjct 2444 CCACTTCAGTGCCCATTTTGCTTTC--TT-------CCCAATGGTGGGAATAGTATCTAC 2394 Query 23750 AGA--GAA--AAGTT----TTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACT 23801 ||| ||| || || |||||| | ||| | |||||||||||||| | | | Sbjct 2393 AGATTGAAATAACTTGGCCTTTTCTACCGCATCATTAATATATGTATCAATCAAGAGAGA 2334 Query 23802 ATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 || | |||| ||| || ||||| || |||||||| ||||| | ||| | || || Sbjct 2333 GTAAGTCTCAGCATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTC 2274 Query 23862 AGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACT 23921 | || || || || || | ||| | ||||| || || || || || ||||| Sbjct 2273 CGGCACCTGCACCTCTTTCATAAAATTCACAGCTAGGTTCTCATTTACTATCCCATCCGC 2214 Query 23922 AGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTT 23981 ||| |||||||| || | || || || ||||||||||||||| || |||| Sbjct 2213 AGCCGCAAAGAACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTT 2154 Query 23982 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGC 24041 |||||| || || | || ||||||| ||| ||| | |||||||| || || Sbjct 2153 CCAATCCGCAAAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGC 2094 Query 24042 ACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTATC 24098 ||||||| |||| ||||||| ||| | || ||| ||| || || | ||| Sbjct 2093 TTTTTTATACAACTGCCATATATCATCATGCTTGATGGGATATAGGACAAACCGATC 2037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521409216200400