Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq7203 203 3e-47
seq4369 147 2e-30
>seq7203
Length=1522
Score = 203 bits (224), Expect = 3e-47
Identities = 559/843 (66%), Gaps = 39/843 (5%)
Strand=Plus/Plus
Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264
|||||||||| |||||| ||||| || |||||| ||||||| ||||| || || || |
Sbjct 661 CATAACACCCGCTTTTTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCTTG 720
Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTA---CA 23321
||| || || | ||||| ||||| || ||||| | | |||||| | ||| |
Sbjct 721 TAACGAAATCATATCCATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACTCC 780
Query 23322 TGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATA 23381
| || ||||| ||||| ||| || ||||| ||||| ||||| ||||| | ||
Sbjct 781 TAATGATTCC---AAAAGGTGATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGC 837
Query 23382 GTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAAC 23441
|| || || || | || || | ||||||| || |||| |||||| || ||
Sbjct 838 ATTCATGCCAATCAACGAAACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTAC 897
Query 23442 AGCATCTTTAATTATTT-GAACAATAACT-----TCTTCACTAGGTGGATATTTTAAATA 23495
|||||||| | || | | | | | || || | ||| | | || | |||
Sbjct 898 TGCATCTTTCACTAAATCGTAGATTTTCTGAGGGTCAT-ACTTGTTCTGAATGT--AATT 954
Query 23496 CTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATT 23555
|| | || ||||| ||||| |||| |||| ||||||||| | | ||| || |||||
Sbjct 955 AGTATATAACAAACAGGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATT 1014
Query 23556 AGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCA-AATG 23614
||| ||||| | || |||||||| || |||||||| | ||| ||||| | |||| ||||
Sbjct 1015 AGAGAATGTAAGACCCGGCATTAAACCACGTTTTTTCAACCAGAATATCG-AGCAGAATG 1073
Query 23615 ATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTG 23674
| || || ||||||||||| || ||| | ||||| || | || || | ||| ||
Sbjct 1074 AGCCTGAGAAGAAAATACCTTCTACAACGGCAAATGCTAACAGGCGGTCAATAAAGTTTC 1133
Query 23675 CATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTG 23734
| |||| |||||| | ||||| || || ||||||||| |||
Sbjct 1134 CGTTAT------CAATCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGGAATAT 1187
Query 23735 TTTCAATTGCTTTTAAGAGAAAAGTTTTTTCT---TCATTA---TCTGTTATATATGTAT 23788
|| || || || || |||| ||| ||| | ||| | ||||| | ||
Sbjct 1188 GGTCTATGGCATT------AAGCATTTTATCTCGCTCAACAGGGTCTTTGATATAAGAAT 1241
Query 23789 CAATTAGTAAACTA-TACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAA 23847
|||| || || | | || |||| |||||||| ||||| || |||||| || |||||
Sbjct 1242 CAATCAG-AAGCGAGTAAGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATAG 1300
Query 23848 AAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTA 23907
|||||| | ||||| | ||||| ||| | | ||| | || || ||||| |||
Sbjct 1301 AAACATTTTGCTTCGGCAAATTGTACACGAGAGATAAAATTGACTGCCAAGTTTTCATTA 1360
Query 23908 ACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 23967
|| ||||||||| ||||||||| || || | |||| |||||||| | ||| ||
Sbjct 1361 ACGATACCATCAGAAGCAGCAAAAAACGCCAATACATGAGAAATAAAATGACGCTCACCA 1420
Query 23968 GTTGAT-AATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCA 24026
| | | | ||| ||| || || | ||| ||||| || | ||| || |||||||
Sbjct 1421 -TCGCTCAGGCTTTCCCAGTCTTTCAAATCCGGTGATAGGTCTATTTCTTCGGCTGTCCA 1479
Query 24027 AAA 24029
||
Sbjct 1480 GAA 1482
>seq4369
Length=2652
Score = 147 bits (162), Expect = 2e-30
Identities = 393/597 (66%), Gaps = 24/597 (4%)
Strand=Plus/Minus
Query 23511 TGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCC 23570
||||||||||||||||| |||||| || | | ||||||||||||||| || || || ||
Sbjct 2618 TGCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACC 2559
Query 23571 TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAAT 23630
||||||||| || |||||||| | |||| | || | | || | || || ||||| ||
Sbjct 2558 TGGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATAT 2499
Query 23631 ACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAAT 23690
||||| || ||| ||||| | ||||| | |||||| || || ||
Sbjct 2498 CCCCTCCACCGCCATGAAGGCAATGAGACGCTCAGCAAATG------TACCCTCTTCTAT 2445
Query 23691 CCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTA- 23749
||| || || ||| || || ||| || | |||| || ||| | | ||
Sbjct 2444 CCACTTCAGTGCCCATTTTGCTTTC--TT-------CCCAATGGTGGGAATAGTATCTAC 2394
Query 23750 AGA--GAA--AAGTT----TTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACT 23801
||| ||| || || |||||| | ||| | |||||||||||||| | | |
Sbjct 2393 AGATTGAAATAACTTGGCCTTTTCTACCGCATCATTAATATATGTATCAATCAAGAGAGA 2334
Query 23802 ATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861
|| | |||| ||| || ||||| || |||||||| ||||| | ||| | || ||
Sbjct 2333 GTAAGTCTCAGCATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTC 2274
Query 23862 AGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACT 23921
| || || || || || | ||| | ||||| || || || || || |||||
Sbjct 2273 CGGCACCTGCACCTCTTTCATAAAATTCACAGCTAGGTTCTCATTTACTATCCCATCCGC 2214
Query 23922 AGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTT 23981
||| |||||||| || | || || || ||||||||||||||| || ||||
Sbjct 2213 AGCCGCAAAGAACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTT 2154
Query 23982 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGC 24041
|||||| || || | || ||||||| ||| ||| | |||||||| || ||
Sbjct 2153 CCAATCCGCAAAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGC 2094
Query 24042 ACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTATC 24098
||||||| |||| ||||||| ||| | || ||| ||| || || | |||
Sbjct 2093 TTTTTTATACAACTGCCATATATCATCATGCTTGATGGGATATAGGACAAACCGATC 2037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521409216200400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |