Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq113153 150 4e-31 seq131199 122 2e-22 seq19842 111 3e-19 seq154400 100 6e-16 seq100517 100 6e-16 seq74955 100 6e-16 seq71039 100 6e-16 seq30458 86.0 1e-11 >seq113153 Length=1264 Score = 150 bits (166), Expect = 4e-31 Identities = 445/680 (65%), Gaps = 7/680 (1%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 |||| |||| ||||| | ||||||| |||| |||||||| || ||| ||||||| Sbjct 992 CTCTCTGTCCTCACCTCCGTGGAAACGCCACTGGACGTACTGGTTTGGAGTCTTGTCAAG 933 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || | ||| | ||| ||||| |||||||| || ||||| || | | | || ||||| Sbjct 932 GTGCTGCTCAACGTGATGGAACGCATGCTGAGCGACGTAGGCGAACCTAAGGTTAGGATG 873 Query 319110 CTTCCAAACACT-ACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGC 319168 |||||| || | |||| |||| || | ||| | || || |||| ||| || ||||| Sbjct 872 CTTCCAG-CAGTCACCGCTGGTAGCGTTCATCTCGCCAGTCAGCAGCTTGATAAGGGTAG 814 Query 319169 TTTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCAT 319228 || || |||||||| || | || ||| | ||| || || ||||| | | Sbjct 813 ACTTGCCAGCACCGTTAGGTCCAAGGACTGCGACACGAGAGGAAAGAGAGACCTGCACGT 754 Query 319229 TCACGTTGTCAAAGATTA-GTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGTAGC 319287 | | | | || ||| | || | | ||| || || |||| ||| | | | Sbjct 753 TGATGCCG-CAGAGAGCCTGCTTGGCAGCACCAGGGTAGGTGAAAGAGACATCCTTCATC 695 Query 319288 TTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTC 319347 || | || || |||||| || |||| ||||| || | || ||||| ||||| Sbjct 694 TTAAGGACAGCCTTGTCCTTAGACTTGATGCCCTCCAGATAACCAGGCTCAGGGAAGGCG 635 Query 319348 CACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACG 319407 || || | || | ||| ||||||| ||| | || || || ||| || Sbjct 634 AACTTGATGGAGGTAGCCTCAAGCTCGTAGTAGCTCTTGGCCTCTGGCTTCTGCTTGACA 575 Query 319408 AACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATA 319467 ||||| | || || |||||||||| | |||||| ||| | ||||| || | ||| Sbjct 574 AACTCAGCGAGGTTGCCCTTGTACTGCACCAGCTTGCGGT---GCTCGTAGTGAAGAATG 518 Query 319468 GAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCC 319527 |||||| |||| ||| ||||| |||||||||||||| || || | | | |||| | Sbjct 517 TGGGTGCAGACAGTGTCCAGGAAGCCGGAGTCGTGTGAAACGATGATACTGGTCACGTTC 458 Query 319528 TTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTC 319587 || ||| | ||||| || | ||| | ||||| | || | || || || Sbjct 457 TTCAGGCCGCAAAGGTAGTCCTGGAGCCAACGTACGTTGGCAACGTCCAAGTGATTCGTA 398 Query 319588 GGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTC 319647 ||||| ||||| || || | | |||| || ||||| || | || || |||| ||| Sbjct 397 GGCTCATCAAGCAGAAGGATGTCAGCGTGCATAAGCATAGCTCTAGCGAGCTCGAGCTTC 338 Query 319648 ATTTTCCACCCTCCGGAAAG 319667 ||| |||| ||||||||||| Sbjct 337 ATTCTCCAACCTCCGGAAAG 318 >seq131199 Length=545 Score = 122 bits (134), Expect = 2e-22 Identities = 263/386 (68%), Gaps = 12/386 (3%) Strand=Plus/Plus Query 281628 GGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACCATCATCATACAAATACTTC 281687 ||||| || ||||| || || | || |||||| | | ||||| |||| ||| || ||| Sbjct 166 GGGATGATTGGTACGTACCACACAGGCTCAATTCTTTGTCCATCCTCATCCAAGTAGTTC 225 Query 281688 AGAA---GGTTATCATCTGTATCGACGAAAACCTGTCGCGTCTTAGGGTTCAGTTTCGTG 281744 |||| ||| ||||||| || || || | || || || | | ||| || ||| Sbjct 226 AGAACAGGGTCGTCATCTGCATGGAAGATA---TGACGGGTAATGTTCTCCAGCTTGGTG 282 Query 281745 AAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGACC- 281803 ||||| || | ||||| || ||| || || ||| || | || || |||||||| Sbjct 283 AAGATGTAACGAGCACTGGCAGCGTCCTTGCCGCCCATAAGTCGCGTACCGAACTGACCG 342 Query 281804 CTCCGGCAACAACCAG-TTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGA 281862 || || || | || || ||||| ||||| || || || | |||||||| || || | Sbjct 343 CTTGGG--ACGAGGAGGTTGATGTTGTTGCTTCCAACATAGTTCTGAGCCATATTCACTA 400 Query 281863 TTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCAC 281922 | || | || || |||| || |||||||| || ||| |||| ||||| ||| Sbjct 401 TGGTACTATGTAGACTGGCCTCGCCATGGTGATAAGCAGAGTGCTCGGACACATAGCCAG 460 Query 281923 TGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAAGC-GCAATATAATACT 281981 ||||||| | | ||| || | | | ||||| | | |||| |||| | || ||| Sbjct 461 CTAACTGTGAGATCCGCACCTC-GTTCTTAAGTTTTCTCTTGAAGCAGCAAAACAAGACT 519 Query 281982 TTTCGTTGAGAAGGCTTGAAACCATC 282007 || ||||||||||||||||| ||||| Sbjct 520 TTCCGTTGAGAAGGCTTGAATCCATC 545 >seq19842 Length=884 Score = 111 bits (122), Expect = 3e-19 Identities = 255/378 (67%), Gaps = 6/378 (2%) Strand=Plus/Plus Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 || ||| ||||||| ||||| ||| ||| | ||||| || ||| | | || ||| Sbjct 115 TTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCAGGACTCTGCTTTTCCAAC 174 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAG 230349 ||| | ||||| || || ||||| || || | |||| | | |||||| ||| Sbjct 175 GAGCTTATCAGCCGGGATGAGGGCCTTCACTGTGACTTCGCCTGTTTGATGTATAAGAAG 234 Query 230350 CTCCAGAACAAGCTACC--ATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAA 230407 || |||||||| || || ||| ||| || | | ||| |||| || || | | Sbjct 235 CTAGTCAACAAGCTGCCCAATGACAGAAT-TCAGACTATT-ATTGCAGACGCCGTCGCCA 292 Query 230408 ACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAA 230466 |||||| |||||| | || ||| | || ||| | || |||||||||||| |||| Sbjct 293 TCGAAAAAGAGTTCGTCAAGGATGCTTTGCC-TGTTGAGCTCATTGGCATGAACTCTGAC 351 Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAG 230526 || ||| | |||||||| || ||||| || ||| | | | | ||| || || | | Sbjct 352 CTGATGTGCCAGTACATTGAGTTCGTCGCTGACAGGCTGCTCGGTGCTCTGGGCTGCCCT 411 Query 230527 AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAG 230586 ||| | ||| | | | ||||| || | | ||||| | ||||| |||||||| ||| Sbjct 412 AAACTCTACCAGGCAAGCAACCCTTTCGACTGGATGGACATGATTTCTCTTCAAGGCAAG 471 Query 230587 ACCAACTTCTTCGAAAAG 230604 ||||||||||| || ||| Sbjct 472 ACCAACTTCTTTGAGAAG 489 >seq154400 Length=569 Score = 100 bits (110), Expect = 6e-16 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| || || |||| || ||||||||||||||||||| Sbjct 190 CCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 131 Query 165771 CCACGATGGG 165780 ||||| |||| Sbjct 130 CCACGGTGGG 121 >seq100517 Length=982 Score = 100 bits (110), Expect = 6e-16 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| || || |||| || ||||||||||||||||||| Sbjct 425 CCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 366 Query 165771 CCACGATGGG 165780 ||||| |||| Sbjct 365 CCACGGTGGG 356 >seq74955 Length=413 Score = 100 bits (110), Expect = 6e-16 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| || || |||| || ||||||||||||||||||| Sbjct 119 CCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 178 Query 165771 CCACGATGGG 165780 ||||| |||| Sbjct 179 CCACGGTGGG 188 >seq71039 Length=944 Score = 100 bits (110), Expect = 6e-16 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| || || |||| || ||||||||||||||||||| Sbjct 407 CCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 348 Query 165771 CCACGATGGG 165780 ||||| |||| Sbjct 347 CCACGGTGGG 338 >seq30458 Length=84 Score = 86.0 bits (94), Expect = 1e-11 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 || || ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| Sbjct 66 CCGGTGTAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCCGGGGTTCGAGCC 7 Query 165771 CC 165772 || Sbjct 6 CC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1053595578967290