Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq8846 147 3e-30 seq19842 145 9e-30 >seq8846 Length=717 Score = 147 bits (162), Expect = 3e-30 Identities = 371/559 (66%), Gaps = 4/559 (1%) Strand=Plus/Plus Query 53708 ATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 53767 ||||| || || || || || || ||||| | || | | || | || ||||| ||| Sbjct 142 ATAGAAGCAAGGTTGCACACAGCGACCTCGTCAGGGGCAGTGTACTCGATGATCTCTGTG 201 Query 53768 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 53827 |||||||| || | |||||||| || | ||| ||||||||| || ||| || Sbjct 202 CAAAGATTGCTGGATTTGATGGTCCCCAGATTCTGTTGATTAGATTTCCGGTTGCAGTGG 261 Query 53828 TCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAG 53887 ||||| || || ||| | || || ||||| ||||||||||| |||| ||||| |||| Sbjct 262 TCCTTGTACAGCATGTAAGGGGTGCCAGTCTCAATCTGGGAATCTAGGATCGCAAACCAG 321 Query 53888 ACGACACGAGCCTTTATTATAGAT-TTGTATCTCTTTTCTCTTTCGTATAGTGTATACAA 53946 | ||||||| | | | ||| | || || |||| || || ||| | Sbjct 322 AGCTGCTGAGCCTTCACCACCCTTCTTGCCTTTCCTT-CTCTCTCATACTTCTCATAAAG 380 Query 53947 TCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 54006 ||||||||||||||||| || | || || | || || | || || | || Sbjct 381 AGCCTCAAACTCGTCTCCCCACACGTCAGGTAACCCTCGGCACTCGTTAGGGCAGAACAG 440 Query 54007 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 54066 |||||||| |||| | | || |||||||| ||||| || |||||||| | ||| Sbjct 441 AGACCACTCGCCGTTCGCTTGTACGCGTTTCATGAAGAGGTCTGGAATCCACATAGCGTA 500 Query 54067 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 54126 |||| |||||||| | ||| || || || ||||||||| | || | ||| | Sbjct 501 GAATAAATCTCTGGCGCGATGAAGTTCATTGCCATGATTCTTTTTCAAGTCCAAAAACTC 560 Query 54127 CATAATATCAGAATGCCACGGTTCCAAGTATAT-GGTCATAACTCCAGGCCGTTTGTTTC 54185 | || || | |||||| || || | ||| || | || | || | || ||| || Sbjct 561 GAATATGTCGGCATGCCAAGGCTCAAGGTACATAGCAAATGAGCCCTTG-CGCTTGCCTC 619 Query 54186 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 54245 | |||||||||| ||||||||| || | || | || |||| ||| || | ||| |||| Sbjct 620 CACCCTGATCTACGTATCTAGCAGTATCGTTGAAGACCCTCAGCATAGGGACAATGCCAT 679 Query 54246 TGGATGCACCATTGGTCCC 54264 | || | || ||||| || Sbjct 680 TAGAGGTTCCGTTGGTGCC 698 >seq19842 Length=884 Score = 145 bits (160), Expect = 9e-30 Identities = 238/339 (70%), Gaps = 8/339 (2%) Strand=Plus/Minus Query 23967 CTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 24026 || || ||||| ||||| || || ||||| ||| | ||||| || || || | | Sbjct 386 CTGTCAGCGACGAACTCAATGTACTGGCACATCAGGTCAGAGTTCATGCCAATGAGCTCA 327 Query 24027 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGAT 24086 || || | ||| | | | || |||| ||| || | ||| ||||||| ||||||| | Sbjct 326 ACAGGCAAAGCATCCTTGACGAACTCTTTTTCGATGGCGACGGCGTCTGCAATAATAG-T 268 Query 24087 CTTACTGTTTCT-TCACTCGGTGGATAC---AATAAATGTTTAAACATCAAACATGCGAA 24142 || | | ||| ||| | || | | | || | ||| |||||||||| ||||| Sbjct 267 CTGAAT---TCTGTCATTGGGCAGCTTGTTGACTAGCTTCTTATACATCAAACAGGCGAA 211 Query 24143 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 24202 || ||||| || ||||| || | || || | ||||||||||| |||||| ||||| Sbjct 210 GTCACAGTGAAGGCCCTCATCCCGGCTGATAAGCTCGTTGGAAAAGCAGAGTCCTGGCAT 151 Query 24203 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 24262 || |||||||| || ||||| || ||||| ||| |||||||| || || || || || Sbjct 150 GAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGATCCAGAGAAAAAGATGCCCTC 91 Query 24263 TACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC 24301 ||||| |||||||| | ||| ||||| ||||| |||| Sbjct 90 AACTGCAGCAAAGGCTACAAGCCTTTCAGCATAAGCGGC 52 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591406211925840