Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq205478 114 1e-20 seq19842 93.3 4e-14 >seq205478 Length=785 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAA 40776 ||||| |||||||| |||| || || | | |||| | | | | | ||| |||| Sbjct 516 GGCAAGACCATCACTCTCGATGTGGAGCCTTCGGACACCATCGAGAATGTGAAGCAAAAG 457 Query 40777 ATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAG 40836 |||| ||||| |||||||| || | |||||||| || ||||||| ||| ||||| ||| Sbjct 456 ATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAG 397 Query 40837 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTA 40896 || || || | ||||| ||| |||||| ||||||||||||||| ||| || || || Sbjct 396 CTTGAAGATGGCCGCACTCTCTCCGACTATAACATCCAGAAGGAGAGCACTCTCCACCTC 337 Query 40897 GTGTTGCGCTTGAGGGGCGGCGG 40919 || | ||| | | || ||||| Sbjct 336 GTTCTCCGCCTCCGTGGTGGCGG 314 >seq19842 Length=884 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/159 (74%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 || || ||||| || || || |||||| |||| || || || || | |||| || Sbjct 70 CTTGTAGCCTTTGCTGCAGTTGAGGGCATCTTTTTCTCTGGATCCTTTTGCTCCATCTTC 129 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGG--CCTGACTTTCAGCAACGAGCTCATCTCCA 117158 ||||||||||| || || |||||||| || ||| |||| ||||||||| ||| | Sbjct 130 TGGCTCAAGAAGCGTGGTCTCATGCCAGGACTCTGCTTTTC--CAACGAGCTTATCAGCC 187 Query 117159 GGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGT 117197 |||| ||||| || || || ||||| ||||||||| ||| Sbjct 188 GGGATGAGGGCCTTCACTGTGACTTCGCCTGTTTGATGT 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513209954604080