Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq205478 109 5e-19 seq14360 93.3 4e-14 seq10776 86.0 5e-12 >seq205478 Length=785 Score = 109 bits (120), Expect = 5e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || ||||| || ||| | |||||| ||| || ||||| || |||||| | Sbjct 352 CTCCTTCTGGATGTTATAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAA 411 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||||||||||||||| || ||||| |||||||||||||| ||| ||||| || || | Sbjct 412 GATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTTTGCTTCACATT 471 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCC 118711 |||| |||||||| ||| || |||| || | || ||||| Sbjct 472 CTCGATGGTGTCCGAAGGCTCCACATCGAGAGTGATGGTCTTGCC 516 >seq14360 Length=163 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || |||||||| || || | |||||| |||||| ||||| || |||||| | Sbjct 62 CTCCTTCTGAATGTTATAGTCAGAGAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAA 121 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||||||||| || ||||| |||||||||||||| Sbjct 122 GATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC 160 >seq10776 Length=1512 Score = 86.0 bits (94), Expect = 5e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || ||||| || ||||||| |||||| |||||| ||||| |||||||| | Sbjct 461 CTCCTTCTGGATGTTATAGTCGCTCAGAGTGCGGCCATCCTCAAGCTGCTTTCCAGCAAA 402 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCC 118636 ||| || ||||||||||| ||||| ||||| Sbjct 401 GATCAGGCGCTGCTGATCAGGAGGAATGCC 372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432180849788236