Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq205478 104 3e-17 seq200015 96.9 4e-15 seq183007 96.9 4e-15 seq14360 95.1 1e-14 seq9053 95.1 1e-14 seq127296 86.0 7e-12 >seq205478 Length=785 Score = 104 bits (114), Expect = 3e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || || || || | ||||| || | || || |||||||| ||| Sbjct 347 GTGCTCTCCTTCTGGATGTTATAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGCTTGCCA 406 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 ||||| ||||| ||||||||||| | || | || |||||||||| || ||||| || Sbjct 407 GCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTTTGCTTC 466 Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCC 43156 | || | | ||||| | |||||||||| |||||||| ||||| Sbjct 467 ACATTCTCGATGGTGTCCGAAGGCTCCACATCGAGAGTGATGGTCTTGCC 516 >seq200015 Length=1098 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| ||||||| || | |||||| |||||| |||| |||||||||||||||| ||||| Sbjct 390 AAAAGTTTCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACT 331 Query 60118 CACCACTATACTACCGAGGAT 60138 |||||||||||| ||||||| Sbjct 330 AACCACTATACTAACGAGGAT 310 >seq183007 Length=852 Score = 96.9 bits (106), Expect = 4e-15 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 60050 GTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCG 60109 |||| || |||| |||||| || | |||||| |||||| |||| ||||||||||||||| Sbjct 496 GTTTTTGCAAAAGATTCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCG 555 Query 60110 GACATACTCACCACTATACTACCGAGGA 60137 | ||||| |||||||||||| |||||| Sbjct 556 GGTATACTAACCACTATACTAACGAGGA 583 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| |||| |||||||||||||||| ||||| ||||||| Sbjct 343 CTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTA 402 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 403 TACTAACGAGGA 414 >seq14360 Length=163 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| ||||| || || |||| ||||| || | || || |||||||| ||| Sbjct 57 GTGCTCTCCTTCTGAATGTTATAGTCAGAGAGAGTGCGGCCATCCTCCAGCTGCTTGCCA 116 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 43091 ||||| ||||| ||||||||||| | || | || |||||||||| Sbjct 117 GCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 161 >seq9053 Length=1177 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| ||||||| || | |||||| |||||| |||| |||||||||||||||| |||| Sbjct 124 AAAAGATTTCTCCCCGACCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATAC 183 Query 60117 TCACCACTATACTACCGAGGAT 60138 | |||||||||||| ||||||| Sbjct 184 TAACCACTATACTATCGAGGAT 205 >seq127296 Length=332 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| |||| |||||||||||||||| ||||| ||||||| Sbjct 169 CTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTA 228 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 229 TACTAACGAGGA 240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569587632871240