Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq73356 127 4e-24 seq19842 96.9 7e-15 >seq73356 Length=1326 Score = 127 bits (140), Expect = 4e-24 Identities = 256/372 (69%), Gaps = 6/372 (2%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || ||||| | ||| | ||||| || || ||| || |||||| | ||| Sbjct 946 GACTTTGACTACGACTACTTCGGCTTCAAGACTCTCGAGCGCTCCTATCTCATGCGCATT 1005 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 |||| || ||||||| | |||||| ||| | ||| ||||||| || || || ||| Sbjct 1006 AATGGAAAAGTCGTGGAGAGGCCTCAGCATATGATTATGAGAGTGGCAGTAGGCATCCAC 1065 Query 248929 AAGGATGACATAGAGAGCG-TGCTCGAGACGTACACCGGAATGA-GTGAACGCTGGATGA 248986 |||| ||||| || |||| |||| |||||||| | ||| | | | | | | | Sbjct 1066 AAGGGCGACATTGA-AGCGGTGCTAAAGACGTACGACTTGATGTCGCGCAAGTTCT-TCA 1123 Query 248987 CACATGCCACACCGACGCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGC 249045 | ||||| || || || |||||||| |||||||| | | || |||||| ||| ||| Sbjct 1124 CTCATGCGACTCCCACTCTCTTCAATGCCGGTACTCCGCGACCG-CAGCTGTCCTCCTGC 1182 Query 249046 TTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG 249105 || || ||| ||||| | | ||||| | || |||||||||||||| || || ||| Sbjct 1183 TTCCTGCTTACCATGAAGAATGACTCCATTGAGGGCATTTATGACACTCTCAAGCAGTGT 1242 Query 249106 GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAG 249165 ||| |||||||| | || || || || || || | || ||||||||||| | | Sbjct 1243 GCGTGCATTTCTAAGTATGCTGGTGGCATAGGCGTCAGCATCCATAACATCCGAGCCACG 1302 Query 249166 GGTTCGTACATC 249177 || |||||| Sbjct 1303 AACTCCTACATC 1314 >seq19842 Length=884 Score = 96.9 bits (106), Expect = 7e-15 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 157243 AACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAG 157302 ||| || | |||| |||||| | ||||| |||||||| ||||||||||| || || || Sbjct 519 AACACCTGCCTTGGCGTACTCCCCTACTCTCTTCTCAAAGAAGTTGGTCTTGCCTTGAAG 460 Query 157303 AGAAATCATGTCCATCCACTCGAATGGGTTG 157333 |||||||||||||||||| ||||| |||||| Sbjct 459 AGAAATCATGTCCATCCAGTCGAAAGGGTTG 429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1069474252695744