Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq19842 122 8e-23 >seq19842 Length=884 Score = 122 bits (134), Expect = 8e-23 Identities = 284/424 (67%), Gaps = 6/424 (1%) Strand=Plus/Minus Query 13928 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13987 ||||| || ||||||||||| || || |||| || || || | ||||| | || || Sbjct 494 ACTCTCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATCATGTCCATCCAGTCGAAA 435 Query 13988 GGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATG 14047 || || ||| | | | |||| || || || | || | || || || | | Sbjct 434 GGGTTGCTTGCCTGGTAGAGTTTAGGGCAGCCCAGAGCACCGAGCAGCCTGTCAGCGACG 375 Query 14048 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 14107 |||||||| || || |||| | ||| | ||||| || || || | ||||| | | Sbjct 374 AACTCAATGTACTGGCACATCAGGTCAGAGTTCATGCCAATGAGCTCAACAGGCAAAGCA 315 Query 14108 TTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCA 14167 | | | || |||||||| || | || || || |||||| || ||| | ||| Sbjct 314 TCCTTGACGAACTCTTTTTCGATGGCGACGGCGTCTGCAATAATAGTCTGAATTCTGTCA 255 Query 14168 TTAGAAGGAGGATATTT--TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 14225 || | | || | || ||| | ||| | || ||||| || || ||||| ||||||| Sbjct 254 TTGG--GCAGCTTGTTGACTAGCTTCTTATACATCAAACAGGCGAAGTCACAGTGAAGGC 197 Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||| | || ||||| ||||| ||||| | ||||||||| | || || || | Sbjct 196 CCTCATCCCGGCTGATAAGCTCGTTGGAAAAGCAGAGTCCTGGCATGAGACCACGCTTCT 137 Query 14286 ttAACCAAAATATTGCAGCGAATG-ATCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14344 | | ||| || || | ||| || | |||| || || || || ||||||||||||||||| Sbjct 136 TGAGCCAGAAGATGG-AGCAAAAGGATCCAGAGAAAAAGATGCCCTCAACTGCAGCAAAG 78 Query 14345 GCTA 14348 |||| Sbjct 77 GCTA 74 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480464554658440