Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq8846 145 7e-30 seq205478 84.2 2e-11 >seq8846 Length=717 Score = 145 bits (160), Expect = 7e-30 Identities = 353/532 (66%), Gaps = 2/532 (0%) Strand=Plus/Plus Query 23023 GATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGT 23082 ||| || ||||| ||||| || || |||||||| || |||||||| | || || || Sbjct 141 GATAGAAGCAAGGTTGCACACAGCGACCTCGTCAGGGGCAGTGTACTCGATGATCTCTGT 200 Query 23083 ACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGA 23142 || |||||||| | || || || |||| ||| || || ||| || ||||| Sbjct 201 GCAAAGATTGCTGGATTTGATGGTCCCCAGATTCTGTTGATTAGATTTCCGGTTGCAGTG 260 Query 23143 ATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCA 23202 |||||||| |||||||| || ||||| ||||| | ||| || || | |||||| ||| Sbjct 261 GTCCTTGTACAGCATGTAAGGGGTGCCAGTCTCAATCTGGGAATCTAGGATCGCAAACCA 320 Query 23203 CATAGTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACA 23261 | |||||| | || | | | | ||| |||||| ||| ||||| | || | Sbjct 321 GAGCTGCTGAGCCTTCAC-CACCCTTCTTGCCTTTCCTTCTCTCTCATACTTCTCATAAA 379 Query 23262 ACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGA 23321 || ||||| ||| | || | ||| | | || | | | | || || | | Sbjct 380 GAGCCTCAAACTCGTCTCCCCACACGTCAGGTAACCCTCGGCACTCGTTAGGGCAGAACA 439 Query 23322 GACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381 || |||| || || |||||| |||| || || || || ||||| | ||||| Sbjct 440 GAGACCACTCGCCGTTCGCTTGTACGCGTTTCATGAAGAGGTCTGGAATCCACATAGCGT 499 Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441 |||| | || | |||||| || ||||| ||||||||||| |||||||| | Sbjct 500 AGAATAAATCTCTGGCGCGATGAAGTTCATTGCCATGATTCTTTTTCAAGTCCAAAAACT 559 Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501 | || | ||| |||||||| ||||| ||||| | ||||| | |||| | ||| | Sbjct 560 CGAATATGTCGGCATGCCAAGGCTCAAGGTACATAGCAAATGAGCCCTTGCGCTTGCCTC 619 Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCAC 23553 | |||||||| ||||| | || || | |||| | || || ||||| || || Sbjct 620 CACCCTGATCTACGTATCTAGCAGTATCGTTGAAGACCCTCAGCATAGGGAC 671 >seq205478 Length=785 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 31219 AGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAG 31278 |||||| || ||||| |||| || || || || |||| |||| | || || || | Sbjct 517 AGGCAAGACCATCACTCTCGATGTGGAGCCTTCGGACACCATCGAGAATGTGAAGCAAAA 458 Query 31279 AATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACA 31338 || ||||||||| ||| | || || |||||||||||||| || ||||||||||| || Sbjct 457 GATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTCATCTTCGCTGGCAAGCA 398 Query 31339 GTTGGAAGA 31347 | | ||||| Sbjct 397 GCTTGAAGA 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444028005765360