Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq19842 132 6e-26 seq8846 132 6e-26 >seq19842 Length=884 Score = 132 bits (146), Expect = 6e-26 Identities = 236/339 (70%), Gaps = 8/339 (2%) Strand=Plus/Minus Query 33414 CTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTA 33473 || || |||||||| || || || ||||| ||| | ||||| || ||||| | | Sbjct 386 CTGTCAGCGACGAACTCAATGTACTGGCACATCAGGTCAGAGTTCATGCCAATGAGCTCA 327 Query 33474 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAAT 33533 || || | ||| | | | || |||| ||| |||| || || | || |||||| | Sbjct 326 ACAGGCAAAGCATCCTTGACGAACTCTTTTTCGATGGCGACGGCGTCTGCAATAATAG-T 268 Query 33534 CTAACGGTTTCT-TCACTCGGTGGAT-GT--AATAAATGTTTAAACATCAAACATGCGAA 33589 || | |||| ||| | || | | || | || | ||| |||||||||| ||||| Sbjct 267 CTGAA---TTCTGTCATTGGGCAGCTTGTTGACTAGCTTCTTATACATCAAACAGGCGAA 211 Query 33590 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCAT 33649 || ||||| || ||||| || | || || | ||||| ||||| |||||| ||||| Sbjct 210 GTCACAGTGAAGGCCCTCATCCCGGCTGATAAGCTCGTTGGAAAAGCAGAGTCCTGGCAT 151 Query 33650 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTC 33709 || |||||||| || ||||| || ||||| || ||||| || || ||||| || || Sbjct 150 GAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGATCCAGAGAAAAAGATGCCCTC 91 Query 33710 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 33748 |||||||||||||| | ||| || || ||||| |||| Sbjct 90 AACTGCAGCAAAGGCTACAAGCCTTTCAGCATAAGCGGC 52 >seq8846 Length=717 Score = 132 bits (146), Expect = 6e-26 Identities = 369/558 (66%), Gaps = 6/558 (1%) Strand=Plus/Plus Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007 ||| || || || ||||| || ||||| | || | | || | || ||||| ||||| Sbjct 144 AGAAGCAAGGTTGCACACAGCGACCTCGTCAGGGGCAGTGTACTCGATGATCTCTGTGCA 203 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067 |||||| || | ||||| || || | ||| ||||||||| || ||| || || Sbjct 204 AAGATTGCTGGATTTGATGGTCCCCAGATTCTGTTGATTAGATTTCCGGTTGCAGTGGTC 263 Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 63126 ||| || || ||| | || || ||||| |||||||| || |||| ||||| ||||| Sbjct 264 CTTGTACAGCATGTAAGGGGTGCCAGTCTCAATCTGGGAATCTAGGATCGCAAACCAGAG 323 Query 63127 CGACTCGAGCCTTTATTATAGAT-TTGTATCTCCTTTCTCTTTCGTATAGAGTATACAAT 63185 | || ||||||| | | | ||| | ||||| |||| || || ||| | Sbjct 324 CTGCT-GAGCCTTCACCACCCTTCTTGCCTTTCCTT-CTCTCTCATACTTCTCATAAAGA 381 Query 63186 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAAC 63245 || |||||||||||||| || | || | | || || | || || | || Sbjct 382 GCCTCAAACTCGTCTCCCCACACGTCAGGTAACCCTCGGCACTCGTTAGGGCAGAACAGA 441 Query 63246 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63305 |||||||| |||| | | || |||||||| ||||| || |||||||| | ||| Sbjct 442 GACCACTCGCCGTTCGCTTGTACGCGTTTCATGAAGAGGTCTGGAATCCACATAGCGTAG 501 Query 63306 AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63365 |||| |||||| | | ||| || || || ||||||||| | || | ||| | Sbjct 502 AATAAATCTCTGGCGCGATGAAGTTCATTGCCATGATTCTTTTTCAAGTCCAAAAACTCG 561 Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGC-CATAACTCCAGGCCGTTTGTTTCC 63424 | || || | |||||| || || | ||| || || || | || | || ||| ||| Sbjct 562 AATATGTCGGCATGCCAAGGCTCAAGGTACATAGCAAATGAGCCCTTG-CGCTTGCCTCC 620 Query 63425 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63484 |||||||||| ||||||||| || | || | || |||| ||| || | ||| || || Sbjct 621 ACCCTGATCTACGTATCTAGCAGTATCGTTGAAGACCCTCAGCATAGGGACAATGCCATT 680 Query 63485 TGATATACCATTGGTACC 63502 || | || ||||| || Sbjct 681 AGAGGTTCCGTTGGTGCC 698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627361445196240