Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq8846 147 3e-30 seq19842 136 5e-27 >seq8846 Length=717 Score = 147 bits (162), Expect = 3e-30 Identities = 372/558 (67%), Gaps = 6/558 (1%) Strand=Plus/Plus Query 65741 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 65800 ||| || || || || || || ||||| | || | | || | || ||||| ||||| Sbjct 144 AGAAGCAAGGTTGCACACAGCGACCTCGTCAGGGGCAGTGTACTCGATGATCTCTGTGCA 203 Query 65801 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 65860 |||||| || | |||||||| || | ||| ||||||||| || ||| || || Sbjct 204 AAGATTGCTGGATTTGATGGTCCCCAGATTCTGTTGATTAGATTTCCGGTTGCAGTGGTC 263 Query 65861 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 65919 ||| || || ||| | || || ||||| |||||||| || |||| ||||| ||||| Sbjct 264 CTTGTACAGCATGTAAGGGGTGCCAGTCTCAATCTGGGAATCTAGGATCGCAAACCAGAG 323 Query 65920 CGACTCGAGCCTTTATTATAGAT-TTGTATCTCTTTTCTCTTTCGTATAGTGTATACAAT 65978 | || ||||||| | | | ||| | || || |||| || || ||| | Sbjct 324 CTGCT-GAGCCTTCACCACCCTTCTTGCCTTTCCTT-CTCTCTCATACTTCTCATAAAGA 381 Query 65979 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 66038 || |||||||||||||| || | || || | || || | || || | || Sbjct 382 GCCTCAAACTCGTCTCCCCACACGTCAGGTAACCCTCGGCACTCGTTAGGGCAGAACAGA 441 Query 66039 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 66098 |||||||| |||| | | || |||||||| ||||| || |||||||| | ||| Sbjct 442 GACCACTCGCCGTTCGCTTGTACGCGTTTCATGAAGAGGTCTGGAATCCACATAGCGTAG 501 Query 66099 AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 66158 ||||||||||||| | ||| || || || ||||||||| | || | ||| | Sbjct 502 AATAAATCTCTGGCGCGATGAAGTTCATTGCCATGATTCTTTTTCAAGTCCAAAAACTCG 561 Query 66159 ATAATATCATAATGCCACGGTTCCAAGTATATGGC-CATAACTCCAGGCCGTTTGTTTCC 66217 | || || |||||| || || | ||| || || || | || | || ||| ||| Sbjct 562 AATATGTCGGCATGCCAAGGCTCAAGGTACATAGCAAATGAGCCCTTG-CGCTTGCCTCC 620 Query 66218 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 66277 |||||||||| ||||||||| || | || | || |||| ||| || | ||| ||||| Sbjct 621 ACCCTGATCTACGTATCTAGCAGTATCGTTGAAGACCCTCAGCATAGGGACAATGCCATT 680 Query 66278 GGATGTACCATTGGTCCC 66295 || || || ||||| || Sbjct 681 AGAGGTTCCGTTGGTGCC 698 >seq19842 Length=884 Score = 136 bits (150), Expect = 5e-27 Identities = 138/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 36146 TTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTG 36205 ||| |||||||||| ||||| || ||||| || ||||| || | || || | |||||| Sbjct 230 TTATACATCAAACAGGCGAAGTCACAGTGAAGGCCCTCATCCCGGCTGATAAGCTCGTTG 171 Query 36206 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 36265 ||||| |||||| ||||| || |||||||| || ||||| || ||||| ||| ||| Sbjct 170 GAAAAGCAGAGTCCTGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAT 111 Query 36266 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 36325 ||||| || || || || || ||||| |||||||| | ||| || || ||||| ||||| Sbjct 110 CCAGAGAAAAAGATGCCCTCAACTGCAGCAAAGGCTACAAGCCTTTCAGCATAAGCGGCA 51 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655606065941720