Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq19842 102 8e-17 >seq19842 Length=884 Score = 102 bits (112), Expect = 8e-17 Identities = 346/521 (66%), Gaps = 31/521 (6%) Strand=Plus/Plus Query 52555 TGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAA---GCCACT 52611 || |||| || |||| | |||||| | ||||| | |||| |||| ||| || Sbjct 1 TGCGTGCAGAAGAAGGCTAGATGGGCACTTCAATGGTGC---AACGCCAAAAATGCCGCT 57 Query 52612 TTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGG-TAGTTT 52670 | ||| ||| | || || || |||||| ||| || || | ||||| || || | ||| Sbjct 58 TATGCTGAAAGGCTTGTAGCCTTTGCTGCAGTTGAGGGCATCTTTTTCTCTGGATCCTTT 117 Query 52671 TGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACG 52729 ||| || | || | |||| || | ||| | | ||||| || ||| ||| ||||| Sbjct 118 TGCTCCA-TCTTCTGGCTCAAGAAGCGTGGTC-TCATGCCAGGACTCTGCTTTTCCAACG 175 Query 52730 AGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTGTATTATAATACGC 52789 || | || || || || || | ||| || || || |||||| ||||| | || Sbjct 176 AGCTTATCAGCCGGGATGAGGGCCTTCACTGTGACTTCGCCTGTTTGATGTATAAGAAGC 235 Query 52790 GCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGAC-ATGTTTAAAGAGGCCGTCGAC 52848 || || || || | |||| | ||||| |||| || || ||| ||||||| | Sbjct 236 TAGTCAAC---AAGCTGCCCAATGACAGAATTC-AGACTATTATTGCAGACGCCGTCGCC 291 Query 52849 ATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGT----ATCATTGTTGGGCATGAACGC 52904 || ||||||||||| | | ||| ||||| || || ||||| ||||||||| | Sbjct 292 ATCGAAAAAGAGTTCGTCAAGGATGCTTTGCCTGTTGAGCTCATT----GGCATGAACTC 347 Query 52905 -GACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTG-TTGATGCAGCTCGGT 52962 |||| |||||||| ||||||| ||||| || || ||||| ||| | | ||| || || Sbjct 348 TGACC-TGATGTGCCAGTACATTGAGTTCGTCGCTGACAGGCTGCTCGGTGC-TCTGGGC 405 Query 52963 CAGCCGAAATACTATAATGCGCGTAACCCCTTTTCG--TTTATGAACAACATATCGCTCG 53020 || ||| ||| | || | ||||| ||||| | ||| ||| || || || Sbjct 406 TGCCCTAAACTCTACCAGGCAAGCAACCC--TTTCGACTGGATGGACATGATTTCTCTTC 463 Query 53021 AGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 | ||||| || ||||| || |||| | || || |||||| Sbjct 464 AAGGCAAGACCAACTTCTTTGAGAAGAGAGTAGGGGAGTAC 504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494129455813600