Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq8846 152 7e-32 seq19842 141 1e-28 >seq8846 Length=717 Score = 152 bits (168), Expect = 7e-32 Identities = 373/560 (67%), Gaps = 4/560 (1%) Strand=Plus/Plus Query 79617 GACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGT 79676 || ||| || || || || || || ||||| | || | | || | || || || || Sbjct 141 GATAGAAGCAAGGTTGCACACAGCGACCTCGTCAGGGGCAGTGTACTCGATGATCTCTGT 200 Query 79677 GCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGC 79736 ||| || || || | || ||||| || | ||| ||||||||| || ||| || Sbjct 201 GCAAAGATTGCTGGATTTGATGGTCCCCAGATTCTGTTGATTAGATTTCCGGTTGCAGTG 260 Query 79737 ATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 79796 ||||| || || ||| | || || ||||| |||||||| || |||| ||||| ||| Sbjct 261 GTCCTTGTACAGCATGTAAGGGGTGCCAGTCTCAATCTGGGAATCTAGGATCGCAAACCA 320 Query 79797 GA-CGACTCGAGCCTTTATTATAGA-CTTGTATCTCTTTTCTCTTTCGTATTGTGTATAT 79854 || | || ||||||| | | |||| | || || |||| || || | ||| Sbjct 321 GAGCTGCT-GAGCCTTCACCACCCTTCTTGCCTTTCCTT-CTCTCTCATACTTCTCATAA 378 Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914 | || |||||||||||||| || || ||| || | || |||| ||| || | | Sbjct 379 AGAGCCTCAAACTCGTCTCCCCACACGTCAGGTAACCCTCGGCACTCGTTAGGGCAGAAC 438 Query 79915 AACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 79974 | |||||||| || | | | ||| |||||||| ||||| || |||||||| | ||| Sbjct 439 AGAGACCACTCGCCGTTCGCTTGTACGCGTTTCATGAAGAGGTCTGGAATCCACATAGCG 498 Query 79975 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 80034 |||| |||||||| | ||| || || || ||||||||| | || | ||| Sbjct 499 TAGAATAAATCTCTGGCGCGATGAAGTTCATTGCCATGATTCTTTTTCAAGTCCAAAAAC 558 Query 80035 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTT 80094 | | || || | |||||| || || | ||| || || | ||| || ||| | Sbjct 559 TCGAATATGTCGGCATGCCAAGGCTCAAGGTACATAGCAAATGAGCCCTTGCGCTTGCCT 618 Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || |||||||||| ||||||||| || | || | || |||| ||| || | ||| ||| Sbjct 619 CCACCCTGATCTACGTATCTAGCAGTATCGTTGAAGACCCTCAGCATAGGGACAATGCCA 678 Query 80155 TTGGATGTACCATTGGTCCC 80174 || || || || ||||| || Sbjct 679 TTAGAGGTTCCGTTGGTGCC 698 >seq19842 Length=884 Score = 141 bits (156), Expect = 1e-28 Identities = 218/306 (71%), Gaps = 10/306 (3%) Strand=Plus/Minus Query 49821 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTG 49880 ||||| ||| | ||||| || || || | ||| || | ||| | | | || |||| Sbjct 357 CATCAGGTCAGAGTTCATGCCAATGAGCTCAACAGGCAAAGCATCCTTGACGAACTCTTT 298 Query 49881 TTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCT-TCACTCGG----TGGA 49935 ||| |||| || || |||| ||||||| ||| | |||| ||| | || | | Sbjct 297 TTCGATGGCGACGGCGTCTGCAATAATAG-TCTGAA---TTCTGTCATTGGGCAGCTTGT 242 Query 49936 TGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTA 49995 || | || | ||| |||||||||| ||||| || ||||| || ||||| || | || Sbjct 241 TG-ACTAGCTTCTTATACATCAAACAGGCGAAGTCACAGTGAAGGCCCTCATCCCGGCTG 183 Query 49996 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 50055 || || ||||||||||| |||||| ||||| || |||||||| || ||||| || ||| Sbjct 182 ATAAGCTCGTTGGAAAAGCAGAGTCCTGGCATGAGACCACGCTTCTTGAGCCAGAAGATG 123 Query 50056 GACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCT 50115 || ||| || ||||| || ||||| || || ||||| |||||||| ||||| || || Sbjct 122 GAGCAAAAGGATCCAGAGAAAAAGATGCCCTCAACTGCAGCAAAGGCTACAAGCCTTTCA 63 Query 50116 CCATAA 50121 ||||| Sbjct 62 GCATAA 57 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715467704312120