Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq19842 122 8e-23 >seq19842 Length=884 Score = 122 bits (134), Expect = 8e-23 Identities = 284/424 (67%), Gaps = 6/424 (1%) Strand=Plus/Minus Query 13596 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13655 ||||| || ||||||||||| || || |||| || || || | ||||| | || || Sbjct 494 ACTCTCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATCATGTCCATCCAGTCGAAA 435 Query 13656 GGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATA 13715 || || ||| | | | |||| || || || | || | || ||||| | Sbjct 434 GGGTTGCTTGCCTGGTAGAGTTTAGGGCAGCCCAGAGCACCGAGCAGCCTGTCAGCGACG 375 Query 13716 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 13775 |||||||| || || |||| | ||| | ||||| || || || | ||||| | | Sbjct 374 AACTCAATGTACTGGCACATCAGGTCAGAGTTCATGCCAATGAGCTCAACAGGCAAAGCA 315 Query 13776 TTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCA 13835 | | | || |||||||| || | || || ||| |||||| | ||| | ||| Sbjct 314 TCCTTGACGAACTCTTTTTCGATGGCGACGGCGTCTGCAATAATAGTCTGAATTCTGTCA 255 Query 13836 TTAGAAGGAGGATATTT--TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13893 || | | || | || ||| | ||| | || ||||| || || ||||| ||||||| Sbjct 254 TTGG--GCAGCTTGTTGACTAGCTTCTTATACATCAAACAGGCGAAGTCACAGTGAAGGC 197 Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||| | || ||||| ||||| ||||| | ||||||||| | || || || | Sbjct 196 CCTCATCCCGGCTGATAAGCTCGTTGGAAAAGCAGAGTCCTGGCATGAGACCACGCTTCT 137 Query 13954 ttAACCAAAATATTGCAGCAAATG-ACCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14012 | | ||| || || | |||||| | | || || || || || ||||||||||||||||| Sbjct 136 TGAGCCAGAAGATGG-AGCAAAAGGATCCAGAGAAAAAGATGCCCTCAACTGCAGCAAAG 78 Query 14013 GCTA 14016 |||| Sbjct 77 GCTA 74 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477857162742200