Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11-
01] 311,983 sequences; 85,142,588 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq19842 129 6e-25
>seq19842
Length=884
Score = 129 bits (142), Expect = 6e-25
Identities = 303/453 (67%), Gaps = 6/453 (1%)
Strand=Plus/Minus
Query 13384 ACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAAT 13443
||||| || ||||| ||||| || || |||| || || || | ||||| | |||||
Sbjct 494 ACTCTCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATCATGTCCATCCAGTCGAAA 435
Query 13444 GGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATA 13503
|| || ||| | | | |||| || || || | | | || ||||| |
Sbjct 434 GGGTTGCTTGCCTGGTAGAGTTTAGGGCAGCCCAGAGCACCGAGCAGCCTGTCAGCGACG 375
Query 13504 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 13563
|||||||| || || |||| | ||| | ||||| || || || | ||||| | |
Sbjct 374 AACTCAATGTACTGGCACATCAGGTCAGAGTTCATGCCAATGAGCTCAACAGGCAAAGCA 315
Query 13564 TTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCA 13623
| | | || |||||||| || | || || || |||||| ||| ||| |||||
Sbjct 314 TCCTTGACGAACTCTTTTTCGATGGCGACGGCGTCTGCAATAATAGTCTGAATTCTGTCA 255
Query 13624 TTAGAAGGAGGATATTT--TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13681
|| | | || | || ||| | ||| | || ||||| || || ||||| |||||||
Sbjct 254 TTGG--GCAGCTTGTTGACTAGCTTCTTATACATCAAACAGGCGAAGTCACAGTGAAGGC 197
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
||||||| | || ||||| ||||| ||||| | ||||||||| | || || || |
Sbjct 196 CCTCATCCCGGCTGATAAGCTCGTTGGAAAAGCAGAGTCCTGGCATGAGACCACGCTTCT 137
Query 13742 ttAACCAAAATATTGCAGCGAATG-ATCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 13800
| | ||| || || | ||| || | |||| || || || || |||||||||||||||||
Sbjct 136 TGAGCCAGAAGATGG-AGCAAAAGGATCCAGAGAAAAAGATGCCCTCAACTGCAGCAAAG 78
Query 13801 GCTATTAGTCGTTCTCCAAACGATGCTTTTTTG 13833
|||| || | ||| || | | || ||||||
Sbjct 77 GCTACAAGCCTTTCAGCATAAGCGGCATTTTTG 45
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476722405380120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |