Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq19842 129 6e-25 >seq19842 Length=884 Score = 129 bits (142), Expect = 6e-25 Identities = 303/453 (67%), Gaps = 6/453 (1%) Strand=Plus/Minus Query 13384 ACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAAT 13443 ||||| || ||||| ||||| || || |||| || || || | ||||| | ||||| Sbjct 494 ACTCTCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATCATGTCCATCCAGTCGAAA 435 Query 13444 GGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATA 13503 || || ||| | | | |||| || || || | | | || ||||| | Sbjct 434 GGGTTGCTTGCCTGGTAGAGTTTAGGGCAGCCCAGAGCACCGAGCAGCCTGTCAGCGACG 375 Query 13504 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 13563 |||||||| || || |||| | ||| | ||||| || || || | ||||| | | Sbjct 374 AACTCAATGTACTGGCACATCAGGTCAGAGTTCATGCCAATGAGCTCAACAGGCAAAGCA 315 Query 13564 TTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCA 13623 | | | || |||||||| || | || || || |||||| ||| ||| ||||| Sbjct 314 TCCTTGACGAACTCTTTTTCGATGGCGACGGCGTCTGCAATAATAGTCTGAATTCTGTCA 255 Query 13624 TTAGAAGGAGGATATTT--TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13681 || | | || | || ||| | ||| | || ||||| || || ||||| ||||||| Sbjct 254 TTGG--GCAGCTTGTTGACTAGCTTCTTATACATCAAACAGGCGAAGTCACAGTGAAGGC 197 Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||| | || ||||| ||||| ||||| | ||||||||| | || || || | Sbjct 196 CCTCATCCCGGCTGATAAGCTCGTTGGAAAAGCAGAGTCCTGGCATGAGACCACGCTTCT 137 Query 13742 ttAACCAAAATATTGCAGCGAATG-ATCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 13800 | | ||| || || | ||| || | |||| || || || || ||||||||||||||||| Sbjct 136 TGAGCCAGAAGATGG-AGCAAAAGGATCCAGAGAAAAAGATGCCCTCAACTGCAGCAAAG 78 Query 13801 GCTATTAGTCGTTCTCCAAACGATGCTTTTTTG 13833 |||| || | ||| || | | || |||||| Sbjct 77 GCTACAAGCCTTTCAGCATAAGCGGCATTTTTG 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476722405380120