Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq8846 152 7e-32 seq19842 145 1e-29 seq73356 86.0 8e-12 >seq8846 Length=717 Score = 152 bits (168), Expect = 7e-32 Identities = 371/557 (67%), Gaps = 4/557 (1%) Strand=Plus/Plus Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762 ||| || || || || || || ||||| | || | | || | || || || ||||| Sbjct 144 AGAAGCAAGGTTGCACACAGCGACCTCGTCAGGGGCAGTGTACTCGATGATCTCTGTGCA 203 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 |||||| || | |||||||| || | ||| ||||||||| || ||| || || Sbjct 204 AAGATTGCTGGATTTGATGGTCCCCAGATTCTGTTGATTAGATTTCCGGTTGCAGTGGTC 263 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 71881 ||| || || || | || || ||||| |||||||| || |||| ||||| ||||| Sbjct 264 CTTGTACAGCATGTAAGGGGTGCCAGTCTCAATCTGGGAATCTAGGATCGCAAACCAGAG 323 Query 71882 CGACTCGAGCCTTTATTATA-TTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAAT 71940 | || ||||||| | | |||||| | || || |||| || || | ||| | Sbjct 324 CTGCT-GAGCCTTCACCACCCTTCTTGCCTTTCCTT-CTCTCTCATACTTCTCATAAAGA 381 Query 71941 CGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAAT 72000 || |||||||||||||| | | ||| || | || || || || || | || Sbjct 382 GCCTCAAACTCGTCTCCCCACACGTCAGGTAACCCTCGGCACTCGTTAGGGCAGAACAGA 441 Query 72001 GACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 72060 |||||||| || | | | ||| |||||||| ||||| || |||||||| | ||| Sbjct 442 GACCACTCGCCGTTCGCTTGTACGCGTTTCATGAAGAGGTCTGGAATCCACATAGCGTAG 501 Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120 |||| |||||||| | ||| || || || ||||||||| | || | ||| | Sbjct 502 AATAAATCTCTGGCGCGATGAAGTTCATTGCCATGATTCTTTTTCAAGTCCAAAAACTCG 561 Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180 | || || | |||||| || || | ||| || || | ||| || ||| ||| Sbjct 562 AATATGTCGGCATGCCAAGGCTCAAGGTACATAGCAAATGAGCCCTTGCGCTTGCCTCCA 621 Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240 |||||||||| ||||||||| || | || | || |||| ||| || | ||| ||||| Sbjct 622 CCCTGATCTACGTATCTAGCAGTATCGTTGAAGACCCTCAGCATAGGGACAATGCCATTA 681 Query 72241 GATGCACCATTGGTCCC 72257 || | || ||||| || Sbjct 682 GAGGTTCCGTTGGTGCC 698 >seq19842 Length=884 Score = 145 bits (160), Expect = 1e-29 Identities = 221/311 (71%), Gaps = 8/311 (3%) Strand=Plus/Minus Query 41926 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 41985 ||||| ||| | ||||| || || || | ||| || | ||| | | | || |||| Sbjct 357 CATCAGGTCAGAGTTCATGCCAATGAGCTCAACAGGCAAAGCATCCTTGACGAACTCTTT 298 Query 41986 TTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCT-TCACTCGGTGGATAC- 42043 ||| || | ||| ||||||| ||||||| ||| | | ||| ||| | || | | Sbjct 297 TTCGATGGCGACGGCGTCTGCAATAATAG-TCTGAAT---TCTGTCATTGGGCAGCTTGT 242 Query 42044 --AATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAA 42101 | || | ||| |||||||||| ||||| || ||||| || |||||||| | || | Sbjct 241 TGACTAGCTTCTTATACATCAAACAGGCGAAGTCACAGTGAAGGCCCTCATCCCGGCTGA 182 Query 42102 TTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAG 42161 | | ||||||||||| |||||| ||||| || |||||||| || ||||| || || | Sbjct 181 TAAGCTCGTTGGAAAAGCAGAGTCCTGGCATGAGACCACGCTTCTTGAGCCAGAAGATGG 122 Query 42162 ACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTC 42221 | ||| |||||||| || ||||| || || ||||| |||||||| | ||| || || Sbjct 121 AGCAAAAGGATCCAGAGAAAAAGATGCCCTCAACTGCAGCAAAGGCTACAAGCCTTTCAG 62 Query 42222 CATAACCGGCA 42232 ||||| ||||| Sbjct 61 CATAAGCGGCA 51 >seq73356 Length=1326 Score = 86.0 bits (94), Expect = 8e-12 Identities = 213/321 (66%), Gaps = 2/321 (1%) Strand=Plus/Minus Query 72346 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 72405 || ||||| |||||||| || |||| | ||||| |||| || || ||| |||| Sbjct 1229 GTGTCATAAATGCCCTCAATGGAGTCATTCTTCATGGTAAGCAGGAAGCAGGAGGACAGC 1170 Query 72406 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 72465 || | || ||| || ||||| || | || |||| || || || || | || Sbjct 1169 TGCGGTCGCGGAGTACCGGCATTGAAGAGAGTGGGAGTCGCATGAGTGAAGAACTTGCGC 1110 Query 72466 GACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGC 72524 |||| | | |||||||| | | | ||| || || || ||| || || ||||| || Sbjct 1109 GACATCAAGTCGTACGTCTTTAGCACCGCTTCAATGTCGCCCTTG-TGGATGCCTACTGC 1051 Query 72525 GACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTA 72584 || | ||| | |||||||||||| || || |||| || ||| || || | || Sbjct 1050 CACTCTCATAATCATATGCTGAGGCCTCTCCACGACTTTTCCATTAATGCGCATGAGATA 991 Query 72585 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||| || | ||| || || || || |||| ||| |||||| || |||| ||||| Sbjct 990 GGAGCGCTCGAGAGTCTTGAAGCCGAAGTAGTCGTAGTCAAAGTCACGATCGTGGATAAT 931 Query 72645 AACCGAATTGAGTTTATCCTT 72665 | || ||||| |||||||| Sbjct 930 CGCGGAGTTGAGCTTATCCTT 910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668521899737080