Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq92129 165 1e-36 seq5949 159 5e-35 seq24559 84.2 3e-12 >seq92129 Length=542 Score = 165 bits (182), Expect = 1e-36 Identities = 203/275 (74%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||| | | || ||||| || |||||||| || ||||||||||| |||| Sbjct 323 CGCCAAGCGCCATCGTAAGGTC-CTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTA 265 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||| || | ||||| ||||||||| ||||||| | |||| || |||| Sbjct 264 TCCGCCGTCTGGCACGCAGAGGTGGCGTCAAGCGTATCTCTGGCCTCATCTACGACGAGA 205 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || ||||| | ||||| ||| ||| |||| ||| || || ||| || | Sbjct 204 CCCGTGGCGTCCTGAAGGTTTTCCTTGAGAACGTCATCCGTGACTCTGTCACCTACACTG 145 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| | | | ||||| ||||| | ||||| ||||||| || | || | || | Sbjct 144 AGCACGCCAGAAGAAAGACCGTCACTGCTATGGACGTCGTCTACGCGCTCAAGAGACAGG 85 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 |||| | | || ||||| || ||||| ||||| Sbjct 84 GCCGCACCCTCTACGGTTTCGGTGGTTAAGCTTCT 50 >seq5949 Length=968 Score = 159 bits (176), Expect = 5e-35 Identities = 200/272 (74%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| || || ||||||| | | || |||| |||||||| || ||||| |||||||||| Sbjct 767 CGCAAAACGCCATCGCA-AGGTGTTGAGAGACAACATCCAGGGTATCACTAAGCCAGCTA 709 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||||||||| | ||||| ||||||||| ||||||| | |||| || |||| Sbjct 708 TCCGCCGTCTGGCTCGCAGAGGTGGTGTCAAGCGTATCTCTGGCCTCATCTACGACGAGA 649 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | ||| ||||| | |||||| ||| ||| || | ||| || | ||| || | Sbjct 648 CTCGCGGTGTCCTGAAGGTTTTCCTCGAGAACGTCATTCGTGACTCTGTTACCTACACTG 589 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| | | ||||| |||||| | ||||| | |||||||| | || || || | Sbjct 588 AGCACGCCAGGAGAAAGACCGTCACCGCTATGGACGTGGTCTATGCGCTTAAGCGCCAGG 529 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | | || ||||| || ||||| || Sbjct 528 GCCGCACTCTCTACGGTTTCGGTGGTTAAGCT 497 >seq24559 Length=3238 Score = 84.2 bits (92), Expect = 3e-12 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| | ||| ||||||||||| | || || || || || ||||| Sbjct 726 CGCTAAGCGTCATCGCAAACTTCTGAGAGATAACATCAAGGGTATAACAAACCCTGCTAT 785 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 | ||| || ||| | || ||||| ||||||||| |||| Sbjct 786 CTCTCGGCTTGCTAGACGGGGTGGTGTCAAGCGTATCTC 824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78789951759219