Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq19842 149 8e-31 seq8846 138 1e-27 >seq19842 Length=884 Score = 149 bits (164), Expect = 8e-31 Identities = 240/340 (71%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 33136 CTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 33195 || || |||||||| || || || ||||| ||| | ||||| || || || | | Sbjct 386 CTGTCAGCGACGAACTCAATGTACTGGCACATCAGGTCAGAGTTCATGCCAATGAGCTCA 327 Query 33196 ACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGAT 33255 || || | ||| | | | || |||| ||| |||| || || |||| ||||||| | Sbjct 326 ACAGGCAAAGCATCCTTGACGAACTCTTTTTCGATGGCGACGGCGTCTGCAATAATAG-T 268 Query 33256 CTAACGGTTTCT-TCACTCGG----TGGATGCAATAAATGTTTAAACATCAAACATGCGA 33310 || | |||| ||| | || | | || | || | ||| |||||||||| |||| Sbjct 267 CTGAA---TTCTGTCATTGGGCAGCTTGTTG-ACTAGCTTCTTATACATCAAACAGGCGA 212 Query 33311 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 33370 | || ||||| || ||||| || | || || || ||||||||||| |||||| |||| Sbjct 211 AGTCACAGTGAAGGCCCTCATCCCGGCTGATAAGCTCGTTGGAAAAGCAGAGTCCTGGCA 152 Query 33371 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTT 33430 | || |||||||| || ||||| || ||||| || |||||||| || ||||| || | Sbjct 151 TGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGATCCAGAGAAAAAGATGCCCT 92 Query 33431 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 33470 | |||||||||||||| | ||| || || ||||| |||| Sbjct 91 CAACTGCAGCAAAGGCTACAAGCCTTTCAGCATAAGCGGC 52 >seq8846 Length=717 Score = 138 bits (152), Expect = 1e-27 Identities = 370/558 (66%), Gaps = 6/558 (1%) Strand=Plus/Plus Query 62897 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62956 ||| || || || || || || ||||| | || | | || | || ||||| ||||| Sbjct 144 AGAAGCAAGGTTGCACACAGCGACCTCGTCAGGGGCAGTGTACTCGATGATCTCTGTGCA 203 Query 62957 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63016 |||||| || | ||||| || || | ||| ||||||||| || ||| || || Sbjct 204 AAGATTGCTGGATTTGATGGTCCCCAGATTCTGTTGATTAGATTTCCGGTTGCAGTGGTC 263 Query 63017 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 63075 ||| || || ||| | || || ||||| |||||||| || |||| ||||| ||||| Sbjct 264 CTTGTACAGCATGTAAGGGGTGCCAGTCTCAATCTGGGAATCTAGGATCGCAAACCAGAG 323 Query 63076 CGACTCGAGCCTTTATTATAGAT-TTGTATCTCCTTTCTCTTTCGTATAGTGTATACAAT 63134 | || ||||||| | | | ||| | ||||| |||| || || ||| | Sbjct 324 CTGCT-GAGCCTTCACCACCCTTCTTGCCTTTCCTT-CTCTCTCATACTTCTCATAAAGA 381 Query 63135 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 63194 || |||||||||||||| || | || || | || || | || || | || Sbjct 382 GCCTCAAACTCGTCTCCCCACACGTCAGGTAACCCTCGGCACTCGTTAGGGCAGAACAGA 441 Query 63195 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63254 |||||||| |||| | | || |||||||| ||||| || |||||||| | ||| Sbjct 442 GACCACTCGCCGTTCGCTTGTACGCGTTTCATGAAGAGGTCTGGAATCCACATAGCGTAG 501 Query 63255 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63314 |||| |||||||| | ||| || || || ||||||||| | || | ||| | Sbjct 502 AATAAATCTCTGGCGCGATGAAGTTCATTGCCATGATTCTTTTTCAAGTCCAAAAACTCG 561 Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGC-CATAACTCCAGGCCGTTTGTTTCC 63373 | || || | |||||| || || | ||| || || || | || | || ||| ||| Sbjct 562 AATATGTCGGCATGCCAAGGCTCAAGGTACATAGCAAATGAGCCCTTG-CGCTTGCCTCC 620 Query 63374 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63433 |||||||||| ||||||||| || | || | || |||| ||| || | ||| || || Sbjct 621 ACCCTGATCTACGTATCTAGCAGTATCGTTGAAGACCCTCAGCATAGGGACAATGCCATT 680 Query 63434 TGATATACCATTGGTACC 63451 || | || ||||| || Sbjct 681 AGAGGTTCCGTTGGTGCC 698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620517838296280