Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq8846 219 1e-51 seq66070 107 5e-18 >seq8846 Length=717 Score = 219 bits (242), Expect = 1e-51 Identities = 408/594 (69%), Gaps = 14/594 (2%) Strand=Plus/Minus Query 363736 TACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGAC 363795 ||||| || ||||| ||| ||| ||||| | || || ||||| | || || || Sbjct 707 TACATCCGTGGCACCAACGGAACCTCTAATGGCATTGTCCCTATGCTGAGGGTCTTCAAC 648 Query 363796 AATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTAT 363855 ||||||| || ||||| || ||||||||||| |||||||| || | ||||||||||| Sbjct 647 GATACTGCTAGATACGTAGATCAGGGTGGAGGCAAGCGCAAGGGCTCATTTGCTATGTAC 588 Query 363856 CTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACG---GGA 363912 || |||||| |||||||| || || |||||| | || | |||||| | || Sbjct 587 CTTGAGCCTTGGCATGCCGACATATTCGAGTTTTTGGACTT---GAAAAAGAATCATGGC 531 Query 363913 AAAGAGGAATTG--CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTA 363970 || || | || || || | ||| | ||||| || | ||| || | |||| || | Sbjct 530 AATGA--ACTTCATCGCGCCAGAGATTTATTCTACGCTATGTGGATTCCAGACCTCTTCA 473 Query 363971 TGAAGCGCGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAATGTCCAGG 364028 |||| ||||| | || | | | | ||||| || || ||||| |||| || | ||| Sbjct 472 TGAAACGCGTACAAGC--GAACGGCGAGTGGTCTCTGTTCTGCCCTAACGAGTGCCGAGG 415 Query 364029 TCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGG 364088 | | || || ||||| ||||| | || ||||| || || |||||||| || || Sbjct 414 GTTACCTGACGTGTGGGGAGACGAGTTTGAGGCTCTTTATGAGAAGTATGAGAGAGAAGG 355 Query 364089 AAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGAT 364148 |||||| | | | | || ||| |||| |||||||| ||| | ||||| ||||| Sbjct 354 AAAGGCAAGAAGGGTGGTGAAGGCTCAGCAGCTCTGGTTTGCGATCCTAGATTCCCAGAT 295 Query 364149 TGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCA 364208 |||||| || || || || ||| ||||||| || |||||||| || || || || || Sbjct 294 TGAGACTGGCACCCCTTACATGCTGTACAAGGACCACTGCAACCGGAAATCTAATCAACA 235 Query 364209 GCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCC 364268 | | || || || || | ||||| || || || ||||| || || ||||| || || Sbjct 234 GAATCTGGGGACCATCAAATCCAGCAATCTTTGCACAGAGATCATCGAGTACACTGCCCC 175 Query 364269 CGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA 364322 |||||| || || || |||||||| || ||| || || | |||||||| Sbjct 174 TGACGAGGTCGCTGTGTGCAACCTTGCTTCTATCAACCTCGCGTCCTTTGTAAA 121 >seq66070 Length=901 Score = 107 bits (118), Expect = 5e-18 Identities = 337/517 (65%), Gaps = 14/517 (3%) Strand=Plus/Minus Query 364647 ATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACG 364706 ||| ||||||||||| ||| || | ||| || | ||| ||| | |||| | || Sbjct 875 ATTGCAGTTTGATCTCTGGGGCGTGAAGCCCTCAGCCCGCTGGGATTGGGCTGGCCTGAA 816 Query 364707 TTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGC 364766 || ||||| ||||||| | ||||||||| || | || || ||||| ||||| Sbjct 815 GGAGAAGATTAAGGAGCATGGCATTCGCAACTCTCTTCTCCTTGCACCTATGCCGACGGC 756 Query 364767 TTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTA 364826 ||| || || |||||| | || ||||| |||| | |||| || || || ||| | || Sbjct 755 TTCAACCGCCCAGATCATTGGTAACAATGAGTCCGTCGAGCCTTTCACCTCCAACATGTA 696 Query 364827 TTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCT 364886 | ||||| ||||| | ||||| || | | || || |||||| | || | ||||| Sbjct 695 CACTCGCCGAGTTCTGGCTGGAGAGTTCACCATTGTAAACAAGTACTTGCTCCATGATCT 636 Query 364887 TTCCGACCGCGGGCTGTGGGGTGACAGCA--TGAAGAACTATATCATCGCCGCTAATGGT 364944 | | | ||||| ||| | | | | || |||| | || || |||| ||| Sbjct 635 GACTGCCATGGGGCTCTGGACT--CCGGAGGTGCGGAACCAGATTATTGCCGACCGAGGT 578 Query 364945 TCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGG 365004 || | ||||| | | |||| | || |||||| | || || ||||| ||| Sbjct 577 TCCATCCAGAATGTGAAGGTCATTCCTCAGGAGCTGAAGGAGCTCTATAAGACCGTGTGG 518 Query 365005 GAAATTTCCATGCGAA---CTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGT 365061 || || || || || | | | |||||||| || || || || ||||| || ||| Sbjct 517 GAGAT---CAAGCAAAAGGTTGTACTCGATATGGCAGCTGACCGAGGCGCTTTCATTTGT 461 Query 365062 CAGAGCCAGTCGTTTAACGTATT--CATGACTCAGCCAACCTCCGCCAAGCTTACATCCA 365119 || |||||| |||| |||| |||| | |||| | | |||||| || |||| Sbjct 460 CAAAGCCAGAGCCTTAA--TATTCACATGGCCGAGCCTAATGTAGGCAAGCTCACTTCCA 403 Query 365120 TGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 |||| ||||| | |||||| || || ||||| || Sbjct 402 TGCACTTCTATGCGTGGAAGAAGGGACTGAAGACTGG 366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1298143727870706