Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1890 107 1e-18 seq240073 82.4 5e-11 seq5072 82.4 5e-11 >seq1890 Length=159 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||||||||||||| || |||||||||||||||||||||||||||||||||| | Sbjct 110 CTCTCTTTTCAAAGTTCTTTGCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 51 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 50 GCCAGTATTTAGCCTTA 34 >seq240073 Length=81 Score = 82.4 bits (90), Expect = 5e-11 Identities = 60/70 (86%), Gaps = 5/70 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| |||||| |||||||||||||| || |||||| | Sbjct 12 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTTGATAGTAGATAGGGACAGTGGGAATCTCAT 71 Query 25957 TAATCCTTTC 25966 |||||| ||| Sbjct 72 TAATCCATTC 81 >seq5072 Length=251 Score = 82.4 bits (90), Expect = 5e-11 Identities = 57/65 (88%), Gaps = 5/65 (8%) Strand=Plus/Plus Query 25932 GATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGAT 25986 |||||||||||||| || |||||| ||||||| ||||||||||||||||||||||| Sbjct 1 GATAGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAATTAGAT 60 Query 25987 GACGA 25991 ||||| Sbjct 61 GACGA 65 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333673632668873