Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq8846 143 3e-29 seq19842 138 1e-27 >seq8846 Length=717 Score = 143 bits (158), Expect = 3e-29 Identities = 374/561 (67%), Gaps = 12/561 (2%) Strand=Plus/Plus Query 62752 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62811 ||| || || || || || || ||||| | || | | || | || ||||| ||||| Sbjct 144 AGAAGCAAGGTTGCACACAGCGACCTCGTCAGGGGCAGTGTACTCGATGATCTCTGTGCA 203 Query 62812 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 62871 |||||| || | |||||||| || | ||| ||||||||| || ||| || || Sbjct 204 AAGATTGCTGGATTTGATGGTCCCCAGATTCTGTTGATTAGATTTCCGGTTGCAGTGGTC 263 Query 62872 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 62930 ||| || || ||| | || || ||||| |||||||| || |||| ||||| ||||| Sbjct 264 CTTGTACAGCATGTAAGGGGTGCCAGTCTCAATCTGGGAATCTAGGATCGCAAACCAGAG 323 Query 62931 CGACTCGAGCCTTTATTATAGAT-TTGTATCTCTTTTCTCTTTCGTATAGTGTATACAAT 62989 | || ||||||| | | | ||| | || || |||| || || ||| | Sbjct 324 CTGCT-GAGCCTTCACCACCCTTCTTGCCTTTCCTT-CTCTCTCATACTTCTCATAAAGA 381 Query 62990 CGTTCGAACTCGTCTCCCCAAACATTGTCCAGT---CCAGGACATTCATCCGGACACATC 63046 || |||||||||||||| || ||| || || | || || | || || | | Sbjct 382 GCCTCAAACTCGTCTCCCCACAC---GTCAGGTAACCCTCGGCACTCGTTAGGGCAGAAC 438 Query 63047 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63106 | |||||||| |||| | | || |||||||| ||||| || |||||||| | ||| Sbjct 439 AGAGACCACTCGCCGTTCGCTTGTACGCGTTTCATGAAGAGGTCTGGAATCCACATAGCG 498 Query 63107 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63166 |||| |||||||| | ||| || || || ||||||||| | || | ||| Sbjct 499 TAGAATAAATCTCTGGCGCGATGAAGTTCATTGCCATGATTCTTTTTCAAGTCCAAAAAC 558 Query 63167 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC-CATAACTCCAGGCCGTTTGTT 63225 | | || || | |||||| || || | ||| || || || | || | || ||| Sbjct 559 TCGAATATGTCGGCATGCCAAGGCTCAAGGTACATAGCAAATGAGCCCTTG-CGCTTGCC 617 Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| |||||||||| ||||||||| || | || | || |||| ||| || | ||| || Sbjct 618 TCCACCCTGATCTACGTATCTAGCAGTATCGTTGAAGACCCTCAGCATAGGGACAATGCC 677 Query 63286 ATTGGATGTACCATTGGTCCC 63306 ||| || || || ||||| || Sbjct 678 ATTAGAGGTTCCGTTGGTGCC 698 >seq19842 Length=884 Score = 138 bits (152), Expect = 1e-27 Identities = 219/310 (71%), Gaps = 8/310 (3%) Strand=Plus/Minus Query 32522 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 32581 ||||| ||| | ||||| || || || | ||| || | ||| | | | || |||| Sbjct 357 CATCAGGTCAGAGTTCATGCCAATGAGCTCAACAGGCAAAGCATCCTTGACGAACTCTTT 298 Query 32582 TTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCT-TCACTCGGTGGATAC- 32639 ||| || | ||| ||||||| ||||||| ||| | | ||| ||| | || | | Sbjct 297 TTCGATGGCGACGGCGTCTGCAATAATAG-TCTGAAT---TCTGTCATTGGGCAGCTTGT 242 Query 32640 --AATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAA 32697 | || | ||| |||||||||| ||||| || ||||| || ||||| || | || | Sbjct 241 TGACTAGCTTCTTATACATCAAACAGGCGAAGTCACAGTGAAGGCCCTCATCCCGGCTGA 182 Query 32698 TTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 32757 | | ||||||||||| |||||| ||||| || |||||||| || ||||| || |||| Sbjct 181 TAAGCTCGTTGGAAAAGCAGAGTCCTGGCATGAGACCACGCTTCTTGAGCCAGAAGATGG 122 Query 32758 ACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTC 32817 | ||| |||||||| || || || || || ||||| |||||||| | ||| || || Sbjct 121 AGCAAAAGGATCCAGAGAAAAAGATGCCCTCAACTGCAGCAAAGGCTACAAGCCTTTCAG 62 Query 32818 CATAACCGGC 32827 ||||| |||| Sbjct 61 CATAAGCGGC 52 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631160969846800