Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq113153 228 2e-54 seq19842 136 8e-27 seq154400 89.7 1e-12 seq100517 89.7 1e-12 seq74955 89.7 1e-12 seq71039 89.7 1e-12 seq43398 89.7 1e-12 >seq113153 Length=1264 Score = 228 bits (252), Expect = 2e-54 Identities = 464/680 (68%), Gaps = 12/680 (2%) Strand=Plus/Plus Query 279681 ATGCGTAATCTGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACT 279740 ||| | || | |||||| | || || || || ||||||| |||||||| | ||| || Sbjct 294 ATGAGAAAGCAGCCAGTTGCATCCCTTTCCGGAGGTTGGAGAATGAAGCTCGAGCTCGCT 353 Query 279741 CGCGCCATTCTACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGAC 279800 | || || || ||| || || |||| |||||||||||||| || || ||| ||||| Sbjct 354 AGAGCTATGCTTATGCACGCTGACATCCTTCTGCTTGATGAGCCTACGAATCACTTGGAC 413 Query 279801 ACCACCAACGTAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTC 279860 |||||||| ||||| | |||||| | | |||||||| || | || Sbjct 414 GTTGCCAACGTACGTTGGCTCCAGGACTACCTTTGCGGCCTGAAGAACGTGACCAGTATC 473 Query 279861 ATTGTCTCTCACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG 279920 || || || |||||||| |||||||| || | || ||| | ||| ||||||| ||| Sbjct 474 ATCGTTTCACACGACTCCGGCTTCCTGGACACTGTCTGCACCCACATTCTTCACTACGAG 533 Query 279921 CAAAATCTGAAGCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCC 279978 || | ||||| || ||| |||||||| ||| || || ||| || | Sbjct 534 CAC---CGCAAGCTGGTGCAGTACAAGGGCAACCTCGCTGAGTTTGT--CAAGCAGAAGC 588 Query 279979 CTGAGGCGGCCGCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGC 280038 | ||||| |||||| || || ||| || || ||||| | |||||||||| Sbjct 589 CAGAGGCCAAGAGCTACTACGAGCTTGAGGCTACCTCCATCAAGTTCGCCTTCCCTGAGC 648 Query 280039 CAGGGTTTCTGGAGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCT 280098 | || | |||||||||||||| || ||||| || || | ||| | | |||| Sbjct 649 CTGGTTATCTGGAGGGCATCAAGTCTAAGGACAAGGCTGTCCTTAAGATGAAGGATGTCT 708 Query 280099 CCTTTGCTTATCCCAATGGCCCCAA-CAT-CT-TCAGCAGTGTCAACTCGCAGGTTTCTA 280155 | || | || || || |||| || || || || | ||||| |||||| ||| Sbjct 709 CTTTCACCTACCCTGGTGCTGCCAAGCAGGCTCTCTGCGGCATCAACGTGCAGGTCTCTC 768 Query 280156 TGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAG 280215 | ||| || | | ||| ||||||| || ||||| || ||||||||||| ||||| Sbjct 769 TTTCCTCTCGTGTCGCAGTCCTTGGACCTAACGGTGCTGGCAAGTCTACCCTTATCAAGC 828 Query 280216 TCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGG 280274 | ||||||||||||| | || || || ||| | ||||||||||| ||| | || Sbjct 829 TGCTGACTGGCGAGATGAACGCTACC-AGCGGTGACTGCTGGAAGCATCCTAACCTTAGG 887 Query 280275 ATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCT 280334 | || |||||||||||||| || ||||| ||| | ||| | ||||| |||| |||||| Sbjct 888 TTCGCCTACGTCGCTCAGCATGCGTTCCATCACGTTGAGCAGCACCTTGACAAGACTCCA 947 Query 280335 AACCAATACATTCAGTGGCG 280354 ||||| ||| | |||||||| Sbjct 948 AACCAGTACGTCCAGTGGCG 967 >seq19842 Length=884 Score = 136 bits (150), Expect = 8e-27 Identities = 262/384 (68%), Gaps = 2/384 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||| | ||||| || | ||||| ||||||| ||||| | Sbjct 485 TCAAAGAAGTTGGTCTTGCCTTGAAGAGAAATCATGTCCATCCAGTCGAAAGGGTTGCTT 426 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || | ||| | || || ||| || || ||| | | ||| || || ||||| | Sbjct 425 GCCTGGTAGAGTTTAGGGCAGCCCAGAGCACCGAGCAGCCTGTCAGCGACGAACTCAATG 366 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | |||||| ||||||||||||||||| | | ||| | || || || | Sbjct 365 TACTGGCACATCAGGTCAGAGTTCATGCCAATGAGCTCAACAGGCAAAGCATCCTTGACG 306 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGA-CAG 251801 || || |||||| |||| || || || | | ||| | || | | || || | ||| Sbjct 305 AACTCTTTTTCGATGGCGACGGCGTCTGCAATAATAGTCTGAAT-TCTGTCATTGGGCAG 247 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 |||||| | ||||| |||| | | | || | ||| || ||||| || || Sbjct 246 CTTGTTGACTAGCTTCTTATACATCAAACAGGCGAAGTCACAGTGAAGGCCCTCATCCCG 187 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 ||||| | ||||||||| | | || || ||||| | ||||| ||| |||||||||| Sbjct 186 GCTGATAAGCTCGTTGGAAAAGCAGAGTCCTGGCATGAGACCACGCTTCTTGAGCCAGAA 127 Query 251922 GATTGCGCAAAAGGATCCAGAGAA 251945 ||| | |||||||||||||||||| Sbjct 126 GATGGAGCAAAAGGATCCAGAGAA 103 >seq154400 Length=569 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| |||||||||||||||||||| || ||||||| || ||||||||||||||||||| Sbjct 190 CCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 131 Query 142565 CCAC 142568 |||| Sbjct 130 CCAC 127 >seq100517 Length=982 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| |||||||||||||||||||| || ||||||| || ||||||||||||||||||| Sbjct 425 CCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 366 Query 142565 CCAC 142568 |||| Sbjct 365 CCAC 362 >seq74955 Length=413 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| |||||||||||||||||||| || ||||||| || ||||||||||||||||||| Sbjct 119 CCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 178 Query 142565 CCAC 142568 |||| Sbjct 179 CCAC 182 >seq71039 Length=944 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| |||||||||||||||||||| || ||||||| || ||||||||||||||||||| Sbjct 407 CCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 348 Query 142565 CCAC 142568 |||| Sbjct 347 CCAC 344 >seq43398 Length=544 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCT 280763 ||| | | ||| |||||||| ||||| || ||||||||||| |||| | || |||||| Sbjct 1 CACACCCACATCCGCGGTCTGTCTGGTGGACAGAAGGTCAAGGTTGTGCTAGGTGCAGCT 60 Query 280764 CTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAG 280823 |||||| || ||||| | || || | |||||||| || |||| | ||| | ||| Sbjct 61 ATGTGGCTCCAGCCTCATATCATTGTGATGGACGAGCCAACGAACTTCTTAGACAGAGAG 120 Query 280824 AGCCTGGGCGCTCT 280837 || |||||||| || Sbjct 121 AGTCTGGGCGCCCT 134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1023728246267703