Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq113153 163 5e-35 seq19842 143 5e-29 seq205478 136 7e-27 seq1990 111 3e-19 seq154400 102 1e-16 seq100517 102 1e-16 seq74955 102 1e-16 seq71039 102 1e-16 seq10776 98.7 2e-15 >seq113153 Length=1264 Score = 163 bits (180), Expect = 5e-35 Identities = 439/663 (66%), Gaps = 20/663 (3%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||| ||||||||| || ||| |||| ||||| | ||||| || ||||| ||| Sbjct 967 CGCCACTGGACGTACTGGTTTGGAGTCTTGTCAAGGTGCTGCTCAACGTGATGGAACGCA 908 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCC-CGAGTCGG 225099 ||||| || ||||| || | | | ||| ||||||||||| ||| || | || | Sbjct 907 TGCTGAGCGACGTAGGCGAACCTAAGGTTAGGATGCTTCCAG-CAGTCACCGCTGGTAGC 849 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 | |||||| || || | |||||| || |||| |||||| ||||| || || |||| Sbjct 848 GTTCATCTCGCCAGTCAGCAGCTTGATAAGGGTAGACTTGCCAGCACCGTTAGGTCCAAG 789 Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCT------C 225213 || | | || || || | | |||||| ||| | | || || || | Sbjct 788 GACTGCGACACGAGAGGAAAGAGAGACCTGCACGTTGATGCCGCAGAGAGCCTGCTTGGC 729 Query 225214 AGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTTGGA 225273 || |||| |||| | || | || | || ||| | || || |||||| || Sbjct 728 AGCACCAG---GGTAGGTGAAAGAGACATCCTTCATCTTAAGGACAGCCTTGTCCTTAGA 672 Query 225274 AGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCAG 225333 | || |||||||| | || ||||| ||||| | ||||| | | ||| || Sbjct 671 CTTGATGCCCTCCAGATAACCAGGCTCAGGGAAGGCGAACTTGATGGAGGTAGCCTCAAG 612 Query 225334 GTCGTAGTAAGATGCAGCCTCGGGTCGCT--TTGCCACGAAAGCAGACAGGTTTCCGAGG 225391 |||||||| ||||| || || ||| || || ||| ||||| || | Sbjct 611 CTCGTAGTAGCTCTTGGCCTCTGGCTTCTGCTTGACA--AACTCAGCGAGGTTGCCCTTG 554 Query 225392 TGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGG 225451 | || | |||||| ||| || |||| |||| ||| | ||| || | ||| ||| Sbjct 553 TACTGCACCAGCTTGCGGTGCT---CGTAGTGAAGAATGTGGGTGCAGACAGTGTCCAGG 497 Query 225452 AAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTG 225511 ||||| |||||||| || || ||||| | ||||||| ||||||| |||| || Sbjct 496 AAGCCGGAGTCGTGTGAAACGATGATACTGGTCACGTTCTTCAGGCCGCAAAGGTA-GTC 438 Query 225512 ATG-AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGAT 225570 || ||||| |||||| ||||||| ||| || ||||| || || || || ||||| Sbjct 437 CTGGAGCCAACGTACGTTGGCAACGTCCAAGTGATTCGTAGGCTCATCAAGCAGAAGGAT 378 Query 225571 GTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAG 225630 |||||| | || || || || | | ||| ||||||||| |||| || ||||| || Sbjct 377 GTCAGCGTGCATAAGCATAGCTCTAGCGAGCTCGAGCTTCATTCTCCAACCTCCGGAAAG 318 Query 225631 GGA 225633 ||| Sbjct 317 GGA 315 >seq19842 Length=884 Score = 143 bits (158), Expect = 5e-29 Identities = 287/419 (68%), Gaps = 6/419 (1%) Strand=Plus/Minus Query 9939 ACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGG 9998 || || ||||| ||||||| ||| | ||| |||||||||| |||||| | || Sbjct 518 ACACCTGCCTTGGCGTACTCCCCTACTCTCTTCTCAAAGAAGTTGGTCTTGCCTTGAAGA 459 Query 9999 GAAATGAGCTCCATGAAGTCAAAGGGGTT-CTCGGC-GCCAAACTGCTTGGGGTAACCGA 10056 ||||| | ||||| |||| || ||||| || | | | | | | || ||| | || | Sbjct 458 GAAATCATGTCCATCCAGTCGAAAGGGTTGCTTGCCTGGTAGAGT--TTAGGGCAGCCCA 401 Query 10057 GTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCA 10116 | || || | | |||||| |||||||| |||||||||| ||||||||| ||||||| Sbjct 400 GAGCACCGAGCAGCCTGTCAGCGACGAACTCAATGTACTGGCACATCAGGTCAGAGTTCA 341 Query 10117 TGCCAATCATGCGGCA-GGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCT 10175 ||||||| | || | || | || || | ||| || |||||| ||||||| || Sbjct 340 TGCCAATGA-GCTCAACAGGCAAAGCATCCTTGACGAACTCTTTTTCGATGGCGACGGCG 282 Query 10176 TCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAGG 10235 || | | || ||| | |||| || ||||||||| | |||||| ||||| Sbjct 281 TCTGCAATAATAGTCTGAATTCTGTCATTGGGCAGCTTGTTGACTAGCTTCTTATACATC 222 Query 10236 AGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCC 10295 | | || | ||| |||||||| || |||||||| | ||||||||| || | Sbjct 221 AAACAGGCGAAGTCACAGTGAAGGCCCTCATCCCGGCTGATAAGCTCGTTGGAAAAGCAG 162 Query 10296 AGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAA 10354 || || |||||||| || || || |||||||| |||| ||| || || || ||||| Sbjct 161 AGTCCTGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGATCCAGAGAA 103 >seq205478 Length=785 Score = 136 bits (150), Expect = 7e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || ||| ||| || ||||||||||| |||||| Sbjct 317 CCACCACGGAGGCGGAGAACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTATAGTCGGAG 376 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| ||||| | || ||||| || ||| Sbjct 377 AGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGA 436 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| ||||||||| ||| || |||||||||||| | | || || Sbjct 437 ATGCCCTCCTTGTCCTGAATCTTTTGCTTCACATTCTCGATGGTGTCCGAAGGCTCCACA 496 Query 68415 TCCAAGGTGATGGTTTTTCC 68434 || | |||||||| || || Sbjct 497 TCGAGAGTGATGGTCTTGCC 516 >seq1990 Length=629 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 268313 TTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATT 268372 || || ||| | || || | ||| |||| ||||| | | || | | |||| || || Sbjct 483 TTACCCAGGTAGAGACAGTCCTGAATGCCCAGCTTAATTCTCGCCACAGCGCGGGTAATC 424 Query 268373 TTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTG 268432 || | || |||||||| ||| | || ||||||||||||||||| |||||||| Sbjct 423 TTCCTAGTGACGAACGTAGGGCCCCTCCTGGGACTCTCGTGGTTGAAGAGAATGCCGTTA 364 Query 268433 CACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTT 268492 ||||| | ||||| || || || || || || ||||||||||| ||||||| ||| Sbjct 363 ACTGCGAATAGTCCATAAGCTTCGCGATAATTGACCACCGTCCAGTAGGCAAACACCTTG 304 Query 268493 GCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTC 268548 | || || || ||||| || ||||| || || || || | ||||||| |||| Sbjct 303 GACACAGCATAGGGAGAGCGAGGATGAAAAGGGGTGGTCTCCCTTTGAGGTGTTTC 248 >seq154400 Length=569 Score = 102 bits (112), Expect = 1e-16 Identities = 61/64 (95%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 84457 CCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 84516 |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 190 CCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 131 Query 84517 CCAC 84520 |||| Sbjct 130 CCAC 127 >seq100517 Length=982 Score = 102 bits (112), Expect = 1e-16 Identities = 61/64 (95%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 84457 CCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 84516 |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 425 CCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 366 Query 84517 CCAC 84520 |||| Sbjct 365 CCAC 362 >seq74955 Length=413 Score = 102 bits (112), Expect = 1e-16 Identities = 61/64 (95%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 84457 CCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 84516 |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 119 CCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 178 Query 84517 CCAC 84520 |||| Sbjct 179 CCAC 182 >seq71039 Length=944 Score = 102 bits (112), Expect = 1e-16 Identities = 61/64 (95%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 84457 CCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 84516 |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 407 CCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 348 Query 84517 CCAC 84520 |||| Sbjct 347 CCAC 344 >seq10776 Length=1512 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| || |||||| ||||||| |||||||||||| | || || || || Sbjct 286 CCCTCCTTGTCCTGGATCTTTTGCTTGACGTTCTCGATGGTGTCAGATGGCTCCACATCG 227 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||| || || || |||||||||||||||||||| |||||||| Sbjct 226 AGGGTAATCGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918028268484760