Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq8846 168 1e-36 seq19842 143 5e-29 seq73356 104 4e-17 >seq8846 Length=717 Score = 168 bits (186), Expect = 1e-36 Identities = 383/569 (67%), Gaps = 14/569 (2%) Strand=Plus/Plus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 || |||||||| || || ||||| || | | ||||||| || ||||| ||||| || Sbjct 148 GCAAGGTTGCACACAGCGACCTCGTCAGGGGCAGTGTACTCGATGATCTCTGTGCAAAGA 207 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || ||| | |||||||| ||||| | ||| ||||| || || ||||||| ||||||| Sbjct 208 TTGCTGGATTTGATGGTCCCCAGATTCTGTTGATTAGATTTCCGGTTGCAGTGGTCCTTG 267 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTC 244866 || |||||| | || || ||||| | ||||| | |||| ||| |||||| | Sbjct 268 TACAGCATGTAAGGGGTGCCAGTCTCAATCTGGGAATCTAGGATCGCAAA-CCAGAGCTG 326 Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926 | |||||| ||| ||| | ||||| || ||| ||| || || || ||||| Sbjct 327 CTGAGCCTTCACCACCCTTCTTGCCTTTCCTTCTCTCTCATACTTCTCATAAAGAGCCTC 386 Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCA 244986 |||||| ||||| || || || || ||||| ||||| | ||| ||| Sbjct 387 AAACTCGTCTCCCCACACGTCAGGTAACCCTCGGCACTCGTTAGGGCAGAACAGAGACCA 446 Query 244987 CTCGCCGCCGTC-CTTG-ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAG 245044 ||||||| || |||| || | | |||||||||||| || ||||| | || | ||| Sbjct 447 CTCGCCGT--TCGCTTGTACGCGTTTCATGAAGAGGTCTGGAATCCACATAGCGTAGAAT 504 Query 245045 AGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAG 245104 | || |||| | || || |||| ||||| ||| |||||||| || || Sbjct 505 AAATCTCTGGCGCGATGAAGTTCATTGCCATGATTCTTTTTCAAGTCCAAAAACTCGAAT 564 Query 245105 ACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCC 245164 | |||| | ||||| ||||| | ||| | ||| | | ||| |||||| || ||| Sbjct 565 ATGTCGGCATGCCAAGGCTCAAGGTACATAGCAAATGAGCCCTTGCGCTTGCCTCCACCC 624 Query 245165 TGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTT 245220 || || || | || ||| ||||||||| | ||| |||| || ||||| || Sbjct 625 TGATCTACG----TATCTAGCAGTATCGTTGAAGACCCTCAGCATAGGGACAATGCCATT 680 Query 245221 AGAGTGGCCGTTGGTGCCCTTGATGTAGG 245249 |||| ||||||||||| |||||||| Sbjct 681 AGAGGTTCCGTTGGTGCCACGGATGTAGG 709 >seq19842 Length=884 Score = 143 bits (158), Expect = 5e-29 Identities = 299/437 (68%), Gaps = 19/437 (4%) Strand=Plus/Plus Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758 || ||||| ||||||||| | || || ||||||||||| ||||| || |||| |||| Sbjct 64 GAAAGGCTTGTAGCCTTTGCTGCAGTTGAGGGCATCTTTTTCTCTGGATCCTTTTGCTCC 123 Query 42759 ATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 ||||||||||||||| || ||| || ||||| |||||| ||| || ||||| || || Sbjct 124 ATCTTCTGGCTCAAGAAGCGTGGTCTC-ATGCCAGGACTCTGCTTTTCCAACGAGCTTAT 182 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAG 42877 |||| |||| ||||| || || | ||||| ||||| | ||| || | ||| Sbjct 183 CAGCCGGGATGAGGGCCTTCACTGTGACTTCGCCTGTTTGATGTATAAGAAGCTAGTCA- 241 Query 42878 GCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAA 42937 |||||| | || || | | | | | || || | || ||||| | ||||| || Sbjct 242 --ACAAGCTGCCCAATGACAGAATTCAGACTATTATTGCAGACGCCGTCGCCATCGAAAA 299 Query 42938 GGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTG 42997 |||||| ||| | | | |||| || || | ||||||||| ||||| ||||| Sbjct 300 AGAGTTCGTCAAGGATGCTTTGCCTGTTGAGCTCATTGGCATGAACTCTGACCTGATGTG 359 Query 42998 CAAGTACATCCAGTACGTCGCCGACCATCTCCT--GTGCCAGATGGGTCTCAGCC---GC 43052 | ||||||| ||| |||||| ||| || || |||| |||| | ||| Sbjct 360 CCAGTACATTGAGTTCGTCGCTGACAGGCTGCTCGGTGC--TCTGGG---CTGCCCTAAA 414 Query 43053 CTCTACAA--CACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGA 43110 |||||| | || || ||| ||||||| ||||| | || || | | ||||||| Sbjct 415 CTCTACCAGGCAAGC--AACCCTTTCGACTGGATGGACATGATTTCTCTTCAAGGCAAGA 472 Query 43111 CCAACTTTTTCGAGAAG 43127 ||||||| || |||||| Sbjct 473 CCAACTTCTTTGAGAAG 489 >seq73356 Length=1326 Score = 104 bits (114), Expect = 4e-17 Identities = 258/388 (66%), Gaps = 14/388 (4%) Strand=Plus/Minus Query 245230 GTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCC 245289 ||||||||| |||||||| | | || | | || ||| |||| | ||||| || Sbjct 1326 GTTGGTGCCACGGATGTAGGAGTTCGTGGCTCGGATGTTATGGATGCTGACGCCTATGCC 1267 Query 245290 GCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCT 245349 || || | ||| || ||| || || ||||| ||||| |||||||| ||| Sbjct 1266 ACCAGCATACTTAGAAATGCACGCACACTGCTTGAGAGTGTCATAAATGCCCTCAATGGA 1207 Query 245350 GTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTT 245409 ||| ||||||| | ||||| ||||||||||||||||| || || | | | || Sbjct 1206 GTCATTCTTCATGGTAAGCAGGAAGCAGGAGGACAGCTGCGGTCGCGGAGTACCGGCATT 1147 Query 245410 GAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAG 245469 ||| |||||||| | || || || ||| | || ||| | || ||||||||| || Sbjct 1146 GAAGAGAGTGGGAGTCGCATGAGTGAAGAACTTGCGCGACATCAAGTCGTACGTCTTTAG 1087 Query 245470 CAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTCATGAGGGTGTGCTGGG 245528 || || || |||| | | |||||| | || ||| ||||| | | ||||| | Sbjct 1086 CACCGCTTCAATGTCGCCCTTGTGGATGCCTACTGC-CACTCTCATAATCATATGCTGAG 1028 Query 245529 GCGTCTCGATGGGTCCCTCGGGTCCCT---TGAGCATG---TAGGAGCGCTCGAGCGTCT 245582 || |||| | | | ||| | || ||||| |||||||||||||| |||| Sbjct 1027 GCCTCTCCA------CGACTTTTCCATTAATGCGCATGAGATAGGAGCGCTCGAGAGTCT 974 Query 245583 TGAACCCAAAGTACGAGTAGCCAAAGTC 245610 |||| || ||||| |||| ||||||| Sbjct 973 TGAAGCCGAAGTAGTCGTAGTCAAAGTC 946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 940656477792080