Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq113153 132 1e-25 seq131199 114 3e-20 >seq113153 Length=1264 Score = 132 bits (146), Expect = 1e-25 Identities = 441/680 (65%), Gaps = 7/680 (1%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 |||| |||| ||||| | ||||||| |||| |||||||| || ||| ||||||| Sbjct 992 CTCTCTGTCCTCACCTCCGTGGAAACGCCACTGGACGTACTGGTTTGGAGTCTTGTCAAG 933 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || | ||| | ||| ||||| |||||||| || ||||| || | | | || ||||| Sbjct 932 GTGCTGCTCAACGTGATGGAACGCATGCTGAGCGACGTAGGCGAACCTAAGGTTAGGATG 873 Query 333434 CTTCCAAACACTT-CCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGC 333492 |||||| || | ||| |||| || | ||| | || || |||| ||| || || || Sbjct 872 CTTCCAG-CAGTCACCGCTGGTAGCGTTCATCTCGCCAGTCAGCAGCTTGATAAGGGTAG 814 Query 333493 TTTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCAT 333552 || || ||||| || || | || | | | ||| || || ||||| | | Sbjct 813 ACTTGCCAGCACCGTTAGGTCCAAGGACTGCGACACGAGAGGAAAGAGAGACCTGCACGT 754 Query 333553 TCACGTTGTCAAAGATTA-GTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGTAGC 333611 | | | | || ||| | || | | ||| || || |||| ||| | | | Sbjct 753 TGATGCCG-CAGAGAGCCTGCTTGGCAGCACCAGGGTAGGTGAAAGAGACATCCTTCATC 695 Query 333612 TTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTC 333671 || | || || |||||| || |||| ||||| || | || ||||| ||||| Sbjct 694 TTAAGGACAGCCTTGTCCTTAGACTTGATGCCCTCCAGATAACCAGGCTCAGGGAAGGCG 635 Query 333672 CACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACG 333731 || || | || | ||| ||||||| ||| | || || || ||| || Sbjct 634 AACTTGATGGAGGTAGCCTCAAGCTCGTAGTAGCTCTTGGCCTCTGGCTTCTGCTTGACA 575 Query 333732 AACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATA 333791 ||||| | || || |||||||||| | |||||| ||| | ||||| || | ||| Sbjct 574 AACTCAGCGAGGTTGCCCTTGTACTGCACCAGCTTGCGGT---GCTCGTAGTGAAGAATG 518 Query 333792 GAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCC 333851 |||||| |||| ||| ||||| |||||||||||||| || || | | | |||| | Sbjct 517 TGGGTGCAGACAGTGTCCAGGAAGCCGGAGTCGTGTGAAACGATGATACTGGTCACGTTC 458 Query 333852 TTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTC 333911 || ||| | ||||| || ||||| | ||||| | || | || || || Sbjct 457 TTCAGGCCGCAAAGGTAGTCCTGGAGCCAACGTACGTTGGCAACGTCCAAGTGATTCGTA 398 Query 333912 GGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTC 333971 ||||| ||||| || || | | |||| || ||||| || | || || |||| ||| Sbjct 397 GGCTCATCAAGCAGAAGGATGTCAGCGTGCATAAGCATAGCTCTAGCGAGCTCGAGCTTC 338 Query 333972 ATTTTCCACCCTCCTGAAAG 333991 ||| |||| ||||| ||||| Sbjct 337 ATTCTCCAACCTCCGGAAAG 318 >seq131199 Length=545 Score = 114 bits (126), Expect = 3e-20 Identities = 197/277 (71%), Gaps = 8/277 (3%) Strand=Plus/Plus Query 297430 CAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACC 297489 ||| || ||||| || || || ||||| || ||||| || ||| | || || ||| Sbjct 273 CAGCTTGGTGAAGATGTAACGAGCACTGGCAGCGTCCTTGCCGCCCATAAGTCGCGTACC 332 Query 297490 GAACTGGCC-CTCCGGCAACAACCAG-TTGATGTTATTGCTTCCGACATAATCCTGTGCA 297547 |||||| || || || || | || |||||||| |||||||| ||||| | ||| || Sbjct 333 GAACTGACCGCTTGGG--ACGAGGAGGTTGATGTTGTTGCTTCCAACATAGTTCTGAGCC 390 Query 297548 AGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCA 297607 | ||||| ||||| | || ||| || |||||||||||||| || ||||| | Sbjct 391 ATATTCACTATGGTACTATGTAGACTGGCCTCGCCATGGTGATAAGCAGAGTGCTCGGAC 450 Query 297608 ACGTAACC-GCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTG- 297665 || || || ||| ||||||| | | ||| ||| || | | || | |||| |||| | Sbjct 451 ACATAGCCAGCT-AACTGTGAGATCCGCACCTCGTTCTTAAGTTTTCTCTTG-AAGCAGC 508 Query 297666 AATATATCACTTTCCGTTGAGAAGGTTTGAAACCATC 297702 || | | ||||||||||||||||| ||||| ||||| Sbjct 509 AAAACAAGACTTTCCGTTGAGAAGGCTTGAATCCATC 545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1098471477421050