Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphochytrium_20catenoides_20[genbank_20GCA_5F000327025.2_202011-11- 01] 311,983 sequences; 85,142,588 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq205478 104 3e-17 seq14360 95.1 1e-14 seq200015 87.8 2e-12 seq183007 87.8 2e-12 seq9053 86.0 7e-12 >seq205478 Length=785 Score = 104 bits (114), Expect = 3e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| || || || || || | ||||| || | || || |||||||| ||| Sbjct 347 GTGCTCTCCTTCTGGATGTTATAGTCGGAGAGAGTGCGGCCATCTTCAAGCTGCTTGCCA 406 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131 ||||| ||||| ||||||||||| | || | || |||||||||| || ||||| || Sbjct 407 GCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTTTGCTTC 466 Query 42132 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCC 42181 | || | | ||||| | |||||||||| |||||||| ||||| Sbjct 467 ACATTCTCGATGGTGTCCGAAGGCTCCACATCGAGAGTGATGGTCTTGCC 516 >seq14360 Length=163 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| ||||| || || |||| ||||| || | || || |||||||| ||| Sbjct 57 GTGCTCTCCTTCTGAATGTTATAGTCAGAGAGAGTGCGGCCATCCTCCAGCTGCTTGCCA 116 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC 42116 ||||| ||||| ||||||||||| | || | || |||||||||| Sbjct 117 GCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 161 >seq200015 Length=1098 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| ||||||| || | | ||| |||||| |||| |||||||||||||||| ||||| Sbjct 390 AAAAGTTTCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACT 331 Query 57059 CACCACTATACTACCGAGGAT 57079 |||||||||||| ||||||| Sbjct 330 AACCACTATACTAACGAGGAT 310 >seq183007 Length=852 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 56991 GTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCG 57050 |||| || |||| |||||| || | | ||| |||||| |||| ||||||||||||||| Sbjct 496 GTTTTTGCAAAAGATTCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCG 555 Query 57051 GACATACTCACCACTATACTACCGAGGA 57078 | ||||| |||||||||||| |||||| Sbjct 556 GGTATACTAACCACTATACTAACGAGGA 583 >seq9053 Length=1177 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||| ||||||| || | | ||| |||||| |||| |||||||||||||||| |||| Sbjct 124 AAAAGATTTCTCCCCGACCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATAC 183 Query 57058 TCACCACTATACTACCGAGGAT 57079 | |||||||||||| ||||||| Sbjct 184 TAACCACTATACTATCGAGGAT 205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541094385512720